Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4029 and Shewana3_4030 are separated by 587 nucleotides Shewana3_4030 and Shewana3_4031 are separated by 189 nucleotides
Shewana3_4029: Shewana3_4029 - diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) (RefSeq), at 4,839,264 to 4,842,950
_4029
Shewana3_4030: Shewana3_4030 - hypothetical protein (RefSeq), at 4,843,538 to 4,843,858
_4030
Shewana3_4031: Shewana3_4031 - ubiquinol oxidase, subunit II (RefSeq), at 4,844,048 to 4,845,076
_4031
Position (kb)
4843
4844 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4842.603 kb on + strand at 4842.697 kb on - strand at 4842.702 kb on - strand at 4842.789 kb on + strand at 4842.986 kb on - strand at 4843.558 kb on - strand at 4843.764 kb on + strand, within Shewana3_4030 at 4843.782 kb on - strand, within Shewana3_4030 at 4843.964 kb on - strand at 4843.984 kb on + strand at 4844.009 kb on + strand at 4844.009 kb on + strand at 4844.024 kb on + strand at 4844.031 kb on - strand at 4844.032 kb on - strand at 4844.172 kb on + strand, within Shewana3_4031 at 4844.204 kb on + strand, within Shewana3_4031 at 4844.403 kb on + strand, within Shewana3_4031 at 4844.768 kb on + strand, within Shewana3_4031 at 4844.776 kb on - strand, within Shewana3_4031 at 4844.786 kb on + strand, within Shewana3_4031
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 4,842,603 + +0.4 4,842,697 - +0.4 4,842,702 - -0.0 4,842,789 + -2.1 4,842,986 - +0.7 4,843,558 - +0.7 4,843,764 + Shewana3_4030 0.70 +0.3 4,843,782 - Shewana3_4030 0.76 +1.4 4,843,964 - +0.3 4,843,984 + +0.2 4,844,009 + -0.3 4,844,009 + +0.4 4,844,024 + -0.1 4,844,031 - +0.9 4,844,032 - +0.5 4,844,172 + Shewana3_4031 0.12 +0.6 4,844,204 + Shewana3_4031 0.15 +1.8 4,844,403 + Shewana3_4031 0.34 +0.6 4,844,768 + Shewana3_4031 0.70 +1.2 4,844,776 - Shewana3_4031 0.71 +1.7 4,844,786 + Shewana3_4031 0.72 +0.7
Or see this region's nucleotide sequence