Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3154 and Shewana3_3155 are separated by 255 nucleotides Shewana3_3155 and Shewana3_3156 overlap by 1 nucleotides
Shewana3_3154: Shewana3_3154 - putative sulfate transporter YchM (RefSeq), at 3,782,596 to 3,784,368
_3154
Shewana3_3155: Shewana3_3155 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 3,784,624 to 3,785,115
_3155
Shewana3_3156: Shewana3_3156 - phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq), at 3,785,115 to 3,786,212
_3156
Position (kb)
3784
3785
3786 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3783.682 kb on + strand, within Shewana3_3154 at 3783.699 kb on - strand, within Shewana3_3154 at 3783.715 kb on - strand, within Shewana3_3154 at 3783.727 kb on + strand, within Shewana3_3154 at 3783.805 kb on + strand, within Shewana3_3154 at 3783.806 kb on - strand, within Shewana3_3154 at 3783.930 kb on - strand, within Shewana3_3154 at 3784.151 kb on + strand, within Shewana3_3154 at 3784.182 kb on + strand, within Shewana3_3154 at 3784.570 kb on - strand at 3784.570 kb on - strand at 3784.786 kb on - strand, within Shewana3_3155 at 3784.870 kb on + strand, within Shewana3_3155 at 3784.875 kb on + strand, within Shewana3_3155 at 3784.878 kb on - strand, within Shewana3_3155 at 3785.083 kb on + strand at 3785.083 kb on + strand at 3785.100 kb on + strand at 3785.175 kb on + strand at 3785.315 kb on - strand, within Shewana3_3156 at 3785.677 kb on + strand, within Shewana3_3156 at 3785.797 kb on - strand, within Shewana3_3156 at 3785.880 kb on - strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 3,783,682 + Shewana3_3154 0.61 -1.0 3,783,699 - Shewana3_3154 0.62 +1.4 3,783,715 - Shewana3_3154 0.63 +1.0 3,783,727 + Shewana3_3154 0.64 +0.3 3,783,805 + Shewana3_3154 0.68 -2.5 3,783,806 - Shewana3_3154 0.68 +0.2 3,783,930 - Shewana3_3154 0.75 +0.3 3,784,151 + Shewana3_3154 0.88 -0.9 3,784,182 + Shewana3_3154 0.89 +1.7 3,784,570 - +1.0 3,784,570 - -0.2 3,784,786 - Shewana3_3155 0.33 -0.7 3,784,870 + Shewana3_3155 0.50 -2.1 3,784,875 + Shewana3_3155 0.51 -1.4 3,784,878 - Shewana3_3155 0.52 +1.8 3,785,083 + -0.8 3,785,083 + +0.7 3,785,100 + -1.8 3,785,175 + -0.8 3,785,315 - Shewana3_3156 0.18 +1.8 3,785,677 + Shewana3_3156 0.51 -0.0 3,785,797 - Shewana3_3156 0.62 +0.1 3,785,880 - Shewana3_3156 0.70 -3.7 3,786,019 + Shewana3_3156 0.82 -0.5 3,786,019 + Shewana3_3156 0.82 -0.5 3,786,027 - Shewana3_3156 0.83 +0.0 3,786,027 - Shewana3_3156 0.83 -2.0
Or see this region's nucleotide sequence