Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3139

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3138 and Shewana3_3139 are separated by 64 nucleotidesShewana3_3139 and rpsT are separated by 83 nucleotidesrpsT and Shewana3_3141 are separated by 60 nucleotidesShewana3_3141 and Shewana3_3142 are separated by 135 nucleotides Shewana3_3138: Shewana3_3138 - integral membrane protein MviN (RefSeq), at 3,764,547 to 3,766,106 _3138 Shewana3_3139: Shewana3_3139 - hypothetical protein (RefSeq), at 3,766,171 to 3,766,275 _3139 Shewana3_3140: rpsT - 30S ribosomal protein S20 (RefSeq), at 3,766,359 to 3,766,625 rpsT Shewana3_3141: Shewana3_3141 - ArsR family transcriptional regulator (RefSeq), at 3,766,686 to 3,766,982 _3141 Shewana3_3142: Shewana3_3142 - peptidase M28 (RefSeq), at 3,767,118 to 3,768,524 _3142 Position (kb) 3766 3767Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3766.125 kb on - strandat 3766.176 kb on - strandat 3766.854 kb on + strand, within Shewana3_3141at 3766.932 kb on + strand, within Shewana3_3141at 3766.954 kb on + strandat 3766.962 kb on - strandat 3767.002 kb on + strandat 3767.026 kb on - strandat 3767.043 kb on - strandat 3767.045 kb on - strandat 3767.164 kb on + strandat 3767.183 kb on - strandat 3767.183 kb on - strandat 3767.240 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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3,766,125 - +0.1
3,766,176 - +0.4
3,766,854 + Shewana3_3141 0.57 -2.5
3,766,932 + Shewana3_3141 0.83 +1.8
3,766,954 + -1.7
3,766,962 - +0.2
3,767,002 + +0.2
3,767,026 - +1.1
3,767,043 - -3.1
3,767,045 - +0.3
3,767,164 + -0.5
3,767,183 - -1.3
3,767,183 - +0.2
3,767,240 + -1.5

Or see this region's nucleotide sequence