Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2940 and Shewana3_2941 are separated by 37 nucleotides Shewana3_2941 and Shewana3_2942 are separated by 374 nucleotides Shewana3_2942 and Shewana3_2943 are separated by 143 nucleotides
Shewana3_2940: Shewana3_2940 - hypothetical protein (RefSeq), at 3,530,884 to 3,531,129
_2940
Shewana3_2941: Shewana3_2941 - thioesterase superfamily protein (RefSeq), at 3,531,167 to 3,531,535
_2941
Shewana3_2942: Shewana3_2942 - isocitrate lyase (RefSeq), at 3,531,910 to 3,533,232
_2942
Shewana3_2943: Shewana3_2943 - malate synthase (RefSeq), at 3,533,376 to 3,535,025
_2943
Position (kb)
3531
3532
3533
3534 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3530.941 kb on + strand, within Shewana3_2940 at 3531.067 kb on + strand, within Shewana3_2940 at 3531.196 kb on - strand at 3531.209 kb on - strand, within Shewana3_2941 at 3531.424 kb on + strand, within Shewana3_2941 at 3531.675 kb on + strand at 3531.731 kb on + strand at 3531.807 kb on - strand at 3531.963 kb on - strand at 3532.272 kb on - strand, within Shewana3_2942 at 3532.413 kb on - strand, within Shewana3_2942 at 3532.605 kb on - strand, within Shewana3_2942 at 3532.712 kb on + strand, within Shewana3_2942 at 3532.807 kb on - strand, within Shewana3_2942 at 3533.124 kb on + strand at 3533.132 kb on + strand at 3533.140 kb on - strand at 3533.205 kb on + strand at 3533.230 kb on - strand at 3533.290 kb on - strand at 3533.290 kb on - strand at 3533.294 kb on - strand at 3533.494 kb on - strand at 3533.539 kb on + strand at 3533.571 kb on - strand, within Shewana3_2943 at 3533.802 kb on + strand, within Shewana3_2943 at 3533.887 kb on + strand, within Shewana3_2943 at 3533.958 kb on + strand, within Shewana3_2943 at 3534.160 kb on + strand, within Shewana3_2943
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 3,530,941 + Shewana3_2940 0.23 +0.8 3,531,067 + Shewana3_2940 0.74 +1.4 3,531,196 - -3.0 3,531,209 - Shewana3_2941 0.11 -1.1 3,531,424 + Shewana3_2941 0.70 -1.9 3,531,675 + -1.6 3,531,731 + -1.5 3,531,807 - +1.5 3,531,963 - -0.2 3,532,272 - Shewana3_2942 0.27 -1.6 3,532,413 - Shewana3_2942 0.38 +0.5 3,532,605 - Shewana3_2942 0.53 +0.2 3,532,712 + Shewana3_2942 0.61 -2.7 3,532,807 - Shewana3_2942 0.68 -1.7 3,533,124 + +0.1 3,533,132 + +1.8 3,533,140 - -0.5 3,533,205 + +0.4 3,533,230 - -0.3 3,533,290 - -0.2 3,533,290 - -0.8 3,533,294 - +1.0 3,533,494 - +1.2 3,533,539 + -0.2 3,533,571 - Shewana3_2943 0.12 +0.0 3,533,802 + Shewana3_2943 0.26 +0.6 3,533,887 + Shewana3_2943 0.31 +1.7 3,533,958 + Shewana3_2943 0.35 -2.5 3,534,160 + Shewana3_2943 0.48 -0.9
Or see this region's nucleotide sequence