Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2877 and Shewana3_2878 are separated by 226 nucleotides Shewana3_2878 and Shewana3_2879 are separated by 80 nucleotides Shewana3_2879 and Shewana3_2880 are separated by 185 nucleotides
Shewana3_2877: Shewana3_2877 - phosphate binding protein (RefSeq), at 3,441,048 to 3,442,019
_2877
Shewana3_2878: Shewana3_2878 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,442,246 to 3,443,544
_2878
Shewana3_2879: Shewana3_2879 - two component transcriptional regulator (RefSeq), at 3,443,625 to 3,444,314
_2879
Shewana3_2880: Shewana3_2880 - porin (RefSeq), at 3,444,500 to 3,445,444
_2880
Position (kb)
3442
3443
3444 Strain fitness (log2 ratio)
-2
-1
0
1 at 3441.435 kb on - strand, within Shewana3_2877 at 3441.789 kb on - strand, within Shewana3_2877 at 3442.371 kb on - strand at 3442.395 kb on - strand, within Shewana3_2878 at 3442.481 kb on + strand, within Shewana3_2878 at 3442.505 kb on - strand, within Shewana3_2878 at 3442.588 kb on - strand, within Shewana3_2878 at 3442.643 kb on + strand, within Shewana3_2878 at 3442.750 kb on - strand, within Shewana3_2878 at 3442.800 kb on + strand, within Shewana3_2878 at 3442.839 kb on + strand, within Shewana3_2878 at 3442.857 kb on + strand, within Shewana3_2878 at 3442.934 kb on + strand, within Shewana3_2878 at 3442.947 kb on - strand, within Shewana3_2878 at 3443.044 kb on - strand, within Shewana3_2878 at 3443.044 kb on - strand, within Shewana3_2878 at 3443.046 kb on + strand, within Shewana3_2878 at 3443.201 kb on - strand, within Shewana3_2878 at 3443.201 kb on - strand, within Shewana3_2878 at 3443.341 kb on + strand, within Shewana3_2878 at 3443.349 kb on - strand, within Shewana3_2878 at 3443.434 kb on + strand at 3443.523 kb on + strand at 3443.536 kb on - strand at 3443.571 kb on - strand at 3443.578 kb on + strand at 3443.578 kb on + strand at 3443.719 kb on - strand, within Shewana3_2879 at 3443.778 kb on - strand, within Shewana3_2879 at 3443.790 kb on + strand, within Shewana3_2879 at 3443.960 kb on - strand, within Shewana3_2879 at 3443.962 kb on + strand, within Shewana3_2879 at 3443.962 kb on + strand, within Shewana3_2879 at 3444.034 kb on + strand, within Shewana3_2879 at 3444.042 kb on - strand, within Shewana3_2879 at 3444.042 kb on - strand, within Shewana3_2879 at 3444.097 kb on + strand, within Shewana3_2879 at 3444.175 kb on + strand, within Shewana3_2879 at 3444.192 kb on - strand, within Shewana3_2879 at 3444.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 3,441,435 - Shewana3_2877 0.40 +0.5 3,441,789 - Shewana3_2877 0.76 +1.3 3,442,371 - -0.5 3,442,395 - Shewana3_2878 0.11 -0.5 3,442,481 + Shewana3_2878 0.18 -2.3 3,442,505 - Shewana3_2878 0.20 -0.7 3,442,588 - Shewana3_2878 0.26 -0.1 3,442,643 + Shewana3_2878 0.31 +0.2 3,442,750 - Shewana3_2878 0.39 +0.5 3,442,800 + Shewana3_2878 0.43 +1.7 3,442,839 + Shewana3_2878 0.46 +1.4 3,442,857 + Shewana3_2878 0.47 -1.5 3,442,934 + Shewana3_2878 0.53 +0.2 3,442,947 - Shewana3_2878 0.54 -0.6 3,443,044 - Shewana3_2878 0.61 -0.5 3,443,044 - Shewana3_2878 0.61 -0.2 3,443,046 + Shewana3_2878 0.62 +0.8 3,443,201 - Shewana3_2878 0.74 -0.6 3,443,201 - Shewana3_2878 0.74 +1.0 3,443,341 + Shewana3_2878 0.84 +0.2 3,443,349 - Shewana3_2878 0.85 -0.2 3,443,434 + -0.4 3,443,523 + +0.0 3,443,536 - +1.6 3,443,571 - +0.7 3,443,578 + +0.5 3,443,578 + +0.2 3,443,719 - Shewana3_2879 0.14 -1.5 3,443,778 - Shewana3_2879 0.22 -0.8 3,443,790 + Shewana3_2879 0.24 -1.2 3,443,960 - Shewana3_2879 0.49 -0.2 3,443,962 + Shewana3_2879 0.49 -0.2 3,443,962 + Shewana3_2879 0.49 -0.1 3,444,034 + Shewana3_2879 0.59 +0.2 3,444,042 - Shewana3_2879 0.60 +0.6 3,444,042 - Shewana3_2879 0.60 +0.0 3,444,097 + Shewana3_2879 0.68 +0.8 3,444,175 + Shewana3_2879 0.80 -2.0 3,444,192 - Shewana3_2879 0.82 -0.4 3,444,464 + -1.0
Or see this region's nucleotide sequence