Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2843 and Shewana3_2844 are separated by 614 nucleotides Shewana3_2844 and Shewana3_2845 are separated by 171 nucleotides
Shewana3_2843: Shewana3_2843 - 2-nitropropane dioxygenase, NPD (RefSeq), at 3,402,696 to 3,404,342
_2843
Shewana3_2844: Shewana3_2844 - hypothetical protein (RefSeq), at 3,404,957 to 3,405,271
_2844
Shewana3_2845: Shewana3_2845 - hypothetical protein (RefSeq), at 3,405,443 to 3,405,871
_2845
Position (kb)
3404
3405
3406 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3403.992 kb on - strand, within Shewana3_2843 at 3403.996 kb on + strand, within Shewana3_2843 at 3403.996 kb on + strand, within Shewana3_2843 at 3404.036 kb on + strand, within Shewana3_2843 at 3404.107 kb on - strand, within Shewana3_2843 at 3404.274 kb on - strand at 3404.333 kb on - strand at 3404.358 kb on - strand at 3404.515 kb on + strand at 3404.536 kb on - strand at 3404.536 kb on - strand at 3404.536 kb on - strand at 3404.576 kb on + strand at 3404.747 kb on - strand at 3404.831 kb on - strand at 3405.059 kb on + strand, within Shewana3_2844 at 3405.067 kb on - strand, within Shewana3_2844 at 3405.113 kb on - strand, within Shewana3_2844 at 3405.118 kb on + strand, within Shewana3_2844 at 3405.205 kb on - strand, within Shewana3_2844 at 3405.279 kb on + strand at 3405.522 kb on + strand, within Shewana3_2845 at 3405.830 kb on - strand at 3405.879 kb on + strand at 3405.887 kb on - strand at 3406.231 kb on + strand at 3406.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 3,403,992 - Shewana3_2843 0.79 +0.5 3,403,996 + Shewana3_2843 0.79 -0.1 3,403,996 + Shewana3_2843 0.79 +0.3 3,404,036 + Shewana3_2843 0.81 +0.7 3,404,107 - Shewana3_2843 0.86 -0.5 3,404,274 - -0.2 3,404,333 - -0.2 3,404,358 - -2.0 3,404,515 + +1.8 3,404,536 - -2.0 3,404,536 - -0.1 3,404,536 - -0.6 3,404,576 + -1.4 3,404,747 - +0.7 3,404,831 - -0.6 3,405,059 + Shewana3_2844 0.32 -2.5 3,405,067 - Shewana3_2844 0.35 -1.6 3,405,113 - Shewana3_2844 0.50 -0.1 3,405,118 + Shewana3_2844 0.51 -0.3 3,405,205 - Shewana3_2844 0.79 -2.3 3,405,279 + -0.2 3,405,522 + Shewana3_2845 0.18 -1.8 3,405,830 - -0.2 3,405,879 + -0.8 3,405,887 - -1.0 3,406,231 + -2.9 3,406,240 - +0.2
Or see this region's nucleotide sequence