Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2602
Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.004 vol% |
---|---|---|---|---|---|
remove | |||||
3,104,883 | - | -0.4 | |||
3,105,109 | - | Shewana3_2601 | 0.38 | -0.5 | |
3,105,114 | - | Shewana3_2601 | 0.39 | +1.4 | |
3,105,138 | - | Shewana3_2601 | 0.46 | +0.4 | |
3,105,226 | - | Shewana3_2601 | 0.71 | +1.2 | |
3,105,602 | - | nrdG | Shewana3_2602 | 0.32 | +0.1 |
3,105,667 | + | nrdG | Shewana3_2602 | 0.46 | -0.3 |
3,105,668 | + | nrdG | Shewana3_2602 | 0.46 | -0.1 |
3,105,812 | + | nrdG | Shewana3_2602 | 0.77 | -0.3 |
3,105,859 | - | nrdG | Shewana3_2602 | 0.87 | +0.0 |
3,106,129 | - | +0.3 | |||
3,106,286 | + | Shewana3_2603 | 0.12 | -0.3 | |
3,106,286 | + | Shewana3_2603 | 0.12 | +0.3 | |
3,106,301 | - | Shewana3_2603 | 0.13 | -0.2 | |
3,106,395 | + | Shewana3_2603 | 0.18 | -1.0 | |
3,106,567 | + | Shewana3_2603 | 0.26 | -1.0 | |
3,106,567 | + | Shewana3_2603 | 0.26 | -1.4 |
Or see this region's nucleotide sequence