Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2591 and Shewana3_2592 are separated by 374 nucleotides Shewana3_2592 and Shewana3_2593 are separated by 137 nucleotides Shewana3_2593 and Shewana3_2594 overlap by 4 nucleotides Shewana3_2594 and Shewana3_2595 are separated by 195 nucleotides
Shewana3_2590: Shewana3_2590 - hypothetical protein (RefSeq), at 3,094,805 to 3,095,473
_2590
Shewana3_2591: Shewana3_2591 - RepA domain-containing protein (RefSeq), at 3,095,460 to 3,095,801
_2591
Shewana3_2592: Shewana3_2592 - hypothetical protein (RefSeq), at 3,096,176 to 3,096,334
_2592
Shewana3_2593: Shewana3_2593 - signal transduction histidine kinase, LytS (RefSeq), at 3,096,472 to 3,098,154
_2593
Shewana3_2594: Shewana3_2594 - putative two-component response-regulatory protein YehT (RefSeq), at 3,098,151 to 3,098,861
_2594
Shewana3_2595: Shewana3_2595 - carbon starvation protein CstA (RefSeq), at 3,099,057 to 3,100,511
_2595
Position (kb)
3096
3097
3098
3099 Strain fitness (log2 ratio)
-1
0
1
2 at 3095.803 kb on - strand at 3095.879 kb on + strand at 3096.172 kb on - strand at 3096.288 kb on + strand, within Shewana3_2592 at 3096.291 kb on + strand, within Shewana3_2592 at 3096.489 kb on - strand at 3096.556 kb on - strand at 3096.756 kb on - strand, within Shewana3_2593 at 3096.874 kb on - strand, within Shewana3_2593 at 3097.071 kb on - strand, within Shewana3_2593 at 3097.076 kb on + strand, within Shewana3_2593 at 3097.129 kb on + strand, within Shewana3_2593 at 3097.724 kb on - strand, within Shewana3_2593 at 3098.072 kb on + strand at 3098.403 kb on - strand, within Shewana3_2594 at 3099.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 3,095,803 - +1.8 3,095,879 + -1.2 3,096,172 - +1.0 3,096,288 + Shewana3_2592 0.70 -0.8 3,096,291 + Shewana3_2592 0.72 +0.2 3,096,489 - -0.2 3,096,556 - +0.6 3,096,756 - Shewana3_2593 0.17 -0.5 3,096,874 - Shewana3_2593 0.24 +1.8 3,097,071 - Shewana3_2593 0.36 -0.9 3,097,076 + Shewana3_2593 0.36 +0.8 3,097,129 + Shewana3_2593 0.39 +0.2 3,097,724 - Shewana3_2593 0.74 -0.5 3,098,072 + +1.2 3,098,403 - Shewana3_2594 0.35 -1.2 3,099,074 - +2.2
Or see this region's nucleotide sequence