Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2295 and Shewana3_2296 are separated by 111 nucleotides Shewana3_2296 and Shewana3_2297 are separated by 399 nucleotides Shewana3_2297 and Shewana3_2298 are separated by 101 nucleotides
Shewana3_2295: Shewana3_2295 - L-serine ammonia-lyase (RefSeq), at 2,758,463 to 2,759,839
_2295
Shewana3_2296: Shewana3_2296 - hypothetical protein (RefSeq), at 2,759,951 to 2,760,688
_2296
Shewana3_2297: Shewana3_2297 - ISPsy11, transposase OrfA (RefSeq), at 2,761,088 to 2,761,480
_2297
Shewana3_2298: Shewana3_2298 - integrase catalytic subunit (RefSeq), at 2,761,582 to 2,762,304
_2298
Position (kb)
2759
2760
2761 Strain fitness (log2 ratio)
-1
0
1
2 at 2759.061 kb on + strand, within Shewana3_2295 at 2759.164 kb on + strand, within Shewana3_2295 at 2759.373 kb on - strand, within Shewana3_2295 at 2759.606 kb on + strand, within Shewana3_2295 at 2759.702 kb on + strand at 2759.833 kb on + strand at 2760.051 kb on - strand, within Shewana3_2296 at 2760.076 kb on + strand, within Shewana3_2296 at 2760.084 kb on - strand, within Shewana3_2296 at 2760.084 kb on - strand, within Shewana3_2296 at 2760.094 kb on - strand, within Shewana3_2296 at 2760.110 kb on + strand, within Shewana3_2296 at 2760.165 kb on - strand, within Shewana3_2296 at 2760.464 kb on - strand, within Shewana3_2296 at 2760.466 kb on - strand, within Shewana3_2296 at 2760.559 kb on - strand, within Shewana3_2296 at 2760.860 kb on + strand at 2760.964 kb on + strand at 2760.964 kb on + strand at 2760.972 kb on - strand at 2761.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 2,759,061 + Shewana3_2295 0.43 +2.3 2,759,164 + Shewana3_2295 0.51 +2.7 2,759,373 - Shewana3_2295 0.66 +2.0 2,759,606 + Shewana3_2295 0.83 +2.3 2,759,702 + +2.7 2,759,833 + +1.2 2,760,051 - Shewana3_2296 0.14 -0.8 2,760,076 + Shewana3_2296 0.17 -0.7 2,760,084 - Shewana3_2296 0.18 +0.7 2,760,084 - Shewana3_2296 0.18 -1.2 2,760,094 - Shewana3_2296 0.19 +1.4 2,760,110 + Shewana3_2296 0.22 -0.6 2,760,165 - Shewana3_2296 0.29 -1.3 2,760,464 - Shewana3_2296 0.70 +1.0 2,760,466 - Shewana3_2296 0.70 +1.0 2,760,559 - Shewana3_2296 0.82 +0.2 2,760,860 + -0.3 2,760,964 + +0.2 2,760,964 + +0.3 2,760,972 - -1.1 2,761,050 - +0.2
Or see this region's nucleotide sequence