Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2264 and Shewana3_2265 are separated by 193 nucleotides Shewana3_2265 and Shewana3_2266 are separated by 68 nucleotides Shewana3_2266 and Shewana3_2267 are separated by 132 nucleotides
Shewana3_2264: Shewana3_2264 - sulphate transporter (RefSeq), at 2,724,842 to 2,726,599
_2264
Shewana3_2265: Shewana3_2265 - lysine exporter protein LysE/YggA (RefSeq), at 2,726,793 to 2,727,419
_2265
Shewana3_2266: Shewana3_2266 - GntR family transcriptional regulator (RefSeq), at 2,727,488 to 2,728,870
_2266
Shewana3_2267: Shewana3_2267 - alkaline phosphatase (RefSeq), at 2,729,003 to 2,730,877
_2267
Position (kb)
2727
2728
2729 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2726.586 kb on - strand at 2726.764 kb on + strand at 2726.830 kb on - strand at 2727.016 kb on - strand, within Shewana3_2265 at 2727.078 kb on - strand, within Shewana3_2265 at 2727.084 kb on - strand, within Shewana3_2265 at 2727.248 kb on - strand, within Shewana3_2265 at 2727.561 kb on + strand at 2727.610 kb on + strand at 2727.685 kb on + strand, within Shewana3_2266 at 2727.687 kb on + strand, within Shewana3_2266 at 2727.906 kb on + strand, within Shewana3_2266 at 2727.954 kb on + strand, within Shewana3_2266 at 2728.241 kb on + strand, within Shewana3_2266 at 2728.398 kb on + strand, within Shewana3_2266 at 2728.524 kb on + strand, within Shewana3_2266 at 2728.625 kb on + strand, within Shewana3_2266 at 2728.655 kb on + strand, within Shewana3_2266 at 2728.715 kb on + strand, within Shewana3_2266 at 2728.830 kb on + strand at 2729.019 kb on - strand at 2729.094 kb on - strand at 2729.438 kb on + strand, within Shewana3_2267 at 2729.540 kb on - strand, within Shewana3_2267 at 2729.605 kb on + strand, within Shewana3_2267 at 2729.822 kb on - strand, within Shewana3_2267
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 2,726,586 - -1.0 2,726,764 + +1.0 2,726,830 - +0.4 2,727,016 - Shewana3_2265 0.36 -0.1 2,727,078 - Shewana3_2265 0.45 -0.0 2,727,084 - Shewana3_2265 0.46 -0.8 2,727,248 - Shewana3_2265 0.73 +2.5 2,727,561 + +1.2 2,727,610 + +2.8 2,727,685 + Shewana3_2266 0.14 +1.3 2,727,687 + Shewana3_2266 0.14 +0.7 2,727,906 + Shewana3_2266 0.30 -0.0 2,727,954 + Shewana3_2266 0.34 +0.8 2,728,241 + Shewana3_2266 0.54 +0.8 2,728,398 + Shewana3_2266 0.66 -0.8 2,728,524 + Shewana3_2266 0.75 -0.9 2,728,625 + Shewana3_2266 0.82 +1.5 2,728,655 + Shewana3_2266 0.84 +0.7 2,728,715 + Shewana3_2266 0.89 +1.8 2,728,830 + -1.2 2,729,019 - -0.4 2,729,094 - +1.5 2,729,438 + Shewana3_2267 0.23 +2.0 2,729,540 - Shewana3_2267 0.29 -2.1 2,729,605 + Shewana3_2267 0.32 -0.0 2,729,822 - Shewana3_2267 0.44 +0.4
Or see this region's nucleotide sequence