Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2261 and Shewana3_2262 are separated by 273 nucleotides Shewana3_2262 and Shewana3_2263 are separated by 121 nucleotides Shewana3_2263 and Shewana3_2264 are separated by 90 nucleotides
Shewana3_2261: Shewana3_2261 - hypothetical protein (RefSeq), at 2,722,468 to 2,723,460
_2261
Shewana3_2262: Shewana3_2262 - glutathione S-transferase domain-containing protein (RefSeq), at 2,723,734 to 2,724,405
_2262
Shewana3_2263: Shewana3_2263 - hypothetical protein (RefSeq), at 2,724,527 to 2,724,751
_2263
Shewana3_2264: Shewana3_2264 - sulphate transporter (RefSeq), at 2,724,842 to 2,726,599
_2264
Position (kb)
2723
2724
2725 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2723.113 kb on - strand, within Shewana3_2261 at 2723.513 kb on - strand at 2723.521 kb on + strand at 2723.732 kb on - strand at 2723.739 kb on - strand at 2723.757 kb on - strand at 2723.873 kb on + strand, within Shewana3_2262 at 2723.895 kb on - strand, within Shewana3_2262 at 2723.938 kb on - strand, within Shewana3_2262 at 2724.178 kb on - strand, within Shewana3_2262 at 2724.198 kb on - strand, within Shewana3_2262 at 2724.220 kb on + strand, within Shewana3_2262 at 2724.584 kb on + strand, within Shewana3_2263 at 2724.599 kb on - strand, within Shewana3_2263 at 2724.622 kb on + strand, within Shewana3_2263 at 2724.640 kb on + strand, within Shewana3_2263 at 2724.973 kb on - strand at 2724.973 kb on - strand at 2725.220 kb on + strand, within Shewana3_2264 at 2725.228 kb on - strand, within Shewana3_2264 at 2725.337 kb on + strand, within Shewana3_2264
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 2,723,113 - Shewana3_2261 0.65 +1.1 2,723,513 - +2.0 2,723,521 + +2.0 2,723,732 - -0.3 2,723,739 - -0.3 2,723,757 - +0.3 2,723,873 + Shewana3_2262 0.21 -2.1 2,723,895 - Shewana3_2262 0.24 -0.0 2,723,938 - Shewana3_2262 0.30 -0.8 2,724,178 - Shewana3_2262 0.66 -2.1 2,724,198 - Shewana3_2262 0.69 +5.2 2,724,220 + Shewana3_2262 0.72 -0.3 2,724,584 + Shewana3_2263 0.25 -2.6 2,724,599 - Shewana3_2263 0.32 -0.0 2,724,622 + Shewana3_2263 0.42 +0.2 2,724,640 + Shewana3_2263 0.50 +1.8 2,724,973 - -0.2 2,724,973 - +0.7 2,725,220 + Shewana3_2264 0.22 +0.4 2,725,228 - Shewana3_2264 0.22 +0.7 2,725,337 + Shewana3_2264 0.28 -1.3
Or see this region's nucleotide sequence