Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2184 and Shewana3_2185 are separated by 332 nucleotides Shewana3_2185 and Shewana3_2186 overlap by 2 nucleotides Shewana3_2186 and Shewana3_2187 are separated by 23 nucleotides
Shewana3_2184: Shewana3_2184 - hypothetical protein (RefSeq), at 2,622,334 to 2,623,602
_2184
Shewana3_2185: Shewana3_2185 - no description, at 2,623,935 to 2,624,186
_2185
Shewana3_2186: Shewana3_2186 - Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit-like protein (RefSeq), at 2,624,185 to 2,624,715
_2186
Shewana3_2187: Shewana3_2187 - hypothetical protein (RefSeq), at 2,624,739 to 2,626,139
_2187
Position (kb)
2624
2625 Strain fitness (log2 ratio)
-1
0
1
2 at 2623.233 kb on - strand, within Shewana3_2184 at 2623.466 kb on + strand, within Shewana3_2184 at 2623.661 kb on + strand at 2623.669 kb on - strand at 2623.909 kb on - strand at 2623.953 kb on + strand at 2624.045 kb on - strand, within Shewana3_2185 at 2624.397 kb on - strand, within Shewana3_2186 at 2624.405 kb on - strand, within Shewana3_2186 at 2624.456 kb on - strand, within Shewana3_2186 at 2624.571 kb on - strand, within Shewana3_2186 at 2624.818 kb on + strand at 2624.818 kb on + strand at 2624.821 kb on - strand at 2624.826 kb on - strand at 2624.826 kb on - strand at 2624.826 kb on - strand at 2624.927 kb on - strand, within Shewana3_2187 at 2624.943 kb on - strand, within Shewana3_2187 at 2625.136 kb on + strand, within Shewana3_2187 at 2625.136 kb on + strand, within Shewana3_2187 at 2625.315 kb on + strand, within Shewana3_2187 at 2625.367 kb on + strand, within Shewana3_2187 at 2625.367 kb on + strand, within Shewana3_2187 at 2625.375 kb on - strand, within Shewana3_2187 at 2625.644 kb on - strand, within Shewana3_2187
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 2,623,233 - Shewana3_2184 0.71 +1.0 2,623,466 + Shewana3_2184 0.89 +1.0 2,623,661 + -0.3 2,623,669 - +0.4 2,623,909 - +0.6 2,623,953 + -0.3 2,624,045 - Shewana3_2185 0.44 +1.0 2,624,397 - Shewana3_2186 0.40 -0.0 2,624,405 - Shewana3_2186 0.41 -1.5 2,624,456 - Shewana3_2186 0.51 +0.4 2,624,571 - Shewana3_2186 0.73 +1.0 2,624,818 + -0.8 2,624,818 + +1.0 2,624,821 - +0.4 2,624,826 - -0.3 2,624,826 - -0.3 2,624,826 - -0.6 2,624,927 - Shewana3_2187 0.13 +1.0 2,624,943 - Shewana3_2187 0.15 +1.0 2,625,136 + Shewana3_2187 0.28 +2.0 2,625,136 + Shewana3_2187 0.28 -0.8 2,625,315 + Shewana3_2187 0.41 +1.0 2,625,367 + Shewana3_2187 0.45 -1.2 2,625,367 + Shewana3_2187 0.45 +1.0 2,625,375 - Shewana3_2187 0.45 +1.0 2,625,644 - Shewana3_2187 0.65 +0.5
Or see this region's nucleotide sequence