Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2176

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2175 and Shewana3_2176 overlap by 4 nucleotidesShewana3_2176 and Shewana3_2177 are separated by 110 nucleotides Shewana3_2175: Shewana3_2175 - phage integrase family protein (RefSeq), at 2,607,529 to 2,608,851 _2175 Shewana3_2176: Shewana3_2176 - hypothetical protein (RefSeq), at 2,608,848 to 2,610,494 _2176 Shewana3_2177: Shewana3_2177 - hypothetical protein (RefSeq), at 2,610,605 to 2,612,809 _2177 Position (kb) 2608 2609 2610 2611Strain fitness (log2 ratio) -1 0 1 2at 2607.982 kb on - strand, within Shewana3_2175at 2608.280 kb on + strand, within Shewana3_2175at 2608.473 kb on + strand, within Shewana3_2175at 2608.815 kb on + strandat 2608.831 kb on + strandat 2608.833 kb on + strandat 2608.841 kb on - strandat 2609.421 kb on + strand, within Shewana3_2176at 2609.505 kb on + strand, within Shewana3_2176at 2609.505 kb on + strand, within Shewana3_2176at 2609.537 kb on - strand, within Shewana3_2176at 2609.667 kb on - strand, within Shewana3_2176at 2609.667 kb on - strand, within Shewana3_2176at 2609.667 kb on - strand, within Shewana3_2176at 2609.700 kb on + strand, within Shewana3_2176at 2610.021 kb on + strand, within Shewana3_2176at 2610.134 kb on + strand, within Shewana3_2176at 2610.142 kb on - strand, within Shewana3_2176at 2610.298 kb on - strand, within Shewana3_2176at 2610.578 kb on + strandat 2610.639 kb on - strandat 2610.719 kb on + strandat 2610.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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2,607,982 - Shewana3_2175 0.34 +2.0
2,608,280 + Shewana3_2175 0.57 +2.0
2,608,473 + Shewana3_2175 0.71 +1.0
2,608,815 + +1.0
2,608,831 + +2.0
2,608,833 + +2.0
2,608,841 - -0.0
2,609,421 + Shewana3_2176 0.35 +1.0
2,609,505 + Shewana3_2176 0.40 -0.4
2,609,505 + Shewana3_2176 0.40 -0.6
2,609,537 - Shewana3_2176 0.42 +2.0
2,609,667 - Shewana3_2176 0.50 +1.0
2,609,667 - Shewana3_2176 0.50 +1.0
2,609,667 - Shewana3_2176 0.50 +2.0
2,609,700 + Shewana3_2176 0.52 +1.0
2,610,021 + Shewana3_2176 0.71 -0.5
2,610,134 + Shewana3_2176 0.78 -0.0
2,610,142 - Shewana3_2176 0.79 +2.0
2,610,298 - Shewana3_2176 0.88 -1.0
2,610,578 + +2.0
2,610,639 - -0.0
2,610,719 + +2.0
2,610,809 + +2.0

Or see this region's nucleotide sequence