Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2176
Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.004 vol% |
---|---|---|---|---|---|
remove | |||||
2,607,982 | - | Shewana3_2175 | 0.34 | +2.0 | |
2,608,280 | + | Shewana3_2175 | 0.57 | +2.0 | |
2,608,473 | + | Shewana3_2175 | 0.71 | +1.0 | |
2,608,815 | + | +1.0 | |||
2,608,831 | + | +2.0 | |||
2,608,833 | + | +2.0 | |||
2,608,841 | - | -0.0 | |||
2,609,421 | + | Shewana3_2176 | 0.35 | +1.0 | |
2,609,505 | + | Shewana3_2176 | 0.40 | -0.4 | |
2,609,505 | + | Shewana3_2176 | 0.40 | -0.6 | |
2,609,537 | - | Shewana3_2176 | 0.42 | +2.0 | |
2,609,667 | - | Shewana3_2176 | 0.50 | +1.0 | |
2,609,667 | - | Shewana3_2176 | 0.50 | +1.0 | |
2,609,667 | - | Shewana3_2176 | 0.50 | +2.0 | |
2,609,700 | + | Shewana3_2176 | 0.52 | +1.0 | |
2,610,021 | + | Shewana3_2176 | 0.71 | -0.5 | |
2,610,134 | + | Shewana3_2176 | 0.78 | -0.0 | |
2,610,142 | - | Shewana3_2176 | 0.79 | +2.0 | |
2,610,298 | - | Shewana3_2176 | 0.88 | -1.0 | |
2,610,578 | + | +2.0 | |||
2,610,639 | - | -0.0 | |||
2,610,719 | + | +2.0 | |||
2,610,809 | + | +2.0 |
Or see this region's nucleotide sequence