Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2126

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2124 and Shewana3_2125 are separated by 125 nucleotidesShewana3_2125 and Shewana3_2126 are separated by 110 nucleotidesShewana3_2126 and Shewana3_2127 are separated by 101 nucleotidesShewana3_2127 and Shewana3_2128 are separated by 272 nucleotides Shewana3_2124: Shewana3_2124 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,549,430 to 2,550,440 _2124 Shewana3_2125: Shewana3_2125 - superoxide dismutase, copper/zinc binding (RefSeq), at 2,550,566 to 2,551,078 _2125 Shewana3_2126: Shewana3_2126 - integrase catalytic subunit (RefSeq), at 2,551,189 to 2,551,911 _2126 Shewana3_2127: Shewana3_2127 - ISPsy11, transposase OrfA (RefSeq), at 2,552,013 to 2,552,405 _2127 Shewana3_2128: Shewana3_2128 - quinolinate synthetase (RefSeq), at 2,552,678 to 2,553,751 _2128 Position (kb) 2551 2552Strain fitness (log2 ratio) -1 0 1 2at 2550.904 kb on + strand, within Shewana3_2125at 2551.029 kb on - strandat 2551.145 kb on - strandat 2552.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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2,550,904 + Shewana3_2125 0.66 +2.0
2,551,029 - +2.0
2,551,145 - -0.8
2,552,503 - +2.0

Or see this region's nucleotide sequence