Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2066 and Shewana3_2067 are separated by 76 nucleotides Shewana3_2067 and Shewana3_2068 are separated by 235 nucleotides Shewana3_2068 and Shewana3_2069 are separated by 109 nucleotides
Shewana3_2066: Shewana3_2066 - L-arabinose isomerase (EC 5.3.1.4) (from data) , at 2,473,107 to 2,474,609
_2066
Shewana3_2067: Shewana3_2067 - HAD family hydrolase (RefSeq), at 2,474,686 to 2,475,294
_2067
Shewana3_2068: Shewana3_2068 - GntR family transcriptional regulator (RefSeq), at 2,475,530 to 2,476,246
_2068
Shewana3_2069: Shewana3_2069 - glycoside hydrolase family protein (RefSeq), at 2,476,356 to 2,477,303
_2069
Position (kb)
2475
2476
2477 Strain fitness (log2 ratio)
-1
0
1
2 at 2474.560 kb on - strand at 2474.620 kb on + strand at 2474.801 kb on + strand, within Shewana3_2067 at 2475.153 kb on + strand, within Shewana3_2067 at 2475.367 kb on - strand at 2475.513 kb on - strand at 2475.563 kb on + strand at 2475.801 kb on + strand, within Shewana3_2068 at 2475.903 kb on + strand, within Shewana3_2068 at 2476.059 kb on + strand, within Shewana3_2068 at 2476.391 kb on - strand at 2477.034 kb on - strand, within Shewana3_2069 at 2477.072 kb on - strand, within Shewana3_2069
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 2,474,560 - -0.2 2,474,620 + +0.4 2,474,801 + Shewana3_2067 0.19 -1.2 2,475,153 + Shewana3_2067 0.77 +0.9 2,475,367 - +1.9 2,475,513 - +2.0 2,475,563 + +0.1 2,475,801 + Shewana3_2068 0.38 +0.4 2,475,903 + Shewana3_2068 0.52 -1.6 2,476,059 + Shewana3_2068 0.74 -1.6 2,476,391 - +1.4 2,477,034 - Shewana3_2069 0.72 -0.0 2,477,072 - Shewana3_2069 0.76 +2.0
Or see this region's nucleotide sequence