Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1839 and Shewana3_1840 are separated by 112 nucleotides Shewana3_1840 and Shewana3_1842 are separated by 198 nucleotides Shewana3_1842 and Shewana3_1843 are separated by 152 nucleotides Shewana3_1843 and Shewana3_1844 are separated by 24 nucleotides Shewana3_1844 and Shewana3_1845 are separated by 13 nucleotides
Shewana3_1839: Shewana3_1839 - peptidase S1 and S6, chymotrypsin/Hap (RefSeq), at 2,181,132 to 2,181,974
_1839
Shewana3_1840: Shewana3_1840 - no description, at 2,182,087 to 2,182,728
_1840
Shewana3_1842: Shewana3_1842 - hypothetical protein (RefSeq), at 2,182,927 to 2,183,268
_1842
Shewana3_1843: Shewana3_1843 - hypothetical protein (RefSeq), at 2,183,421 to 2,183,771
_1843
Shewana3_1844: Shewana3_1844 - hypothetical protein (RefSeq), at 2,183,796 to 2,183,996
_1844
Shewana3_1845: Shewana3_1845 - hypothetical protein (RefSeq), at 2,184,010 to 2,187,216
_1845
Position (kb)
2182
2183
2184 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2182.031 kb on + strand at 2182.275 kb on + strand, within Shewana3_1840 at 2182.564 kb on + strand, within Shewana3_1840 at 2182.572 kb on - strand, within Shewana3_1840 at 2182.767 kb on - strand at 2183.188 kb on - strand, within Shewana3_1842 at 2183.197 kb on + strand, within Shewana3_1842 at 2183.253 kb on + strand at 2183.598 kb on - strand, within Shewana3_1843
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 2,182,031 + +0.0 2,182,275 + Shewana3_1840 0.29 -1.8 2,182,564 + Shewana3_1840 0.74 +1.7 2,182,572 - Shewana3_1840 0.76 -0.8 2,182,767 - +1.0 2,183,188 - Shewana3_1842 0.76 +1.0 2,183,197 + Shewana3_1842 0.79 +1.3 2,183,253 + +0.4 2,183,598 - Shewana3_1843 0.50 +2.0
Or see this region's nucleotide sequence