Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1755 and aat overlap by 11 nucleotides aat and Shewana3_1757 are separated by 81 nucleotides Shewana3_1757 and Shewana3_1758 are separated by 60 nucleotides Shewana3_1758 and Shewana3_1759 are separated by 109 nucleotides
Shewana3_1755: Shewana3_1755 - arginyl-tRNA-protein transferase (RefSeq), at 2,069,682 to 2,070,398
_1755
Shewana3_1756: aat - leucyl/phenylalanyl-tRNA--protein transferase (RefSeq), at 2,070,388 to 2,071,098
aat
Shewana3_1757: Shewana3_1757 - 17 kDa surface antigen (RefSeq), at 2,071,180 to 2,071,623
_1757
Shewana3_1758: Shewana3_1758 - hypothetical protein (RefSeq), at 2,071,684 to 2,072,436
_1758
Shewana3_1759: Shewana3_1759 - hypothetical protein (RefSeq), at 2,072,546 to 2,073,502
_1759
Position (kb)
2071
2072 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2070.294 kb on - strand, within Shewana3_1755 at 2070.451 kb on - strand at 2070.451 kb on - strand at 2070.463 kb on - strand, within aat at 2070.510 kb on - strand, within aat at 2071.334 kb on + strand, within Shewana3_1757 at 2071.398 kb on - strand, within Shewana3_1757 at 2071.435 kb on - strand, within Shewana3_1757 at 2071.780 kb on + strand, within Shewana3_1758 at 2071.795 kb on + strand, within Shewana3_1758 at 2072.228 kb on - strand, within Shewana3_1758 at 2072.421 kb on + strand at 2072.439 kb on - strand at 2072.485 kb on + strand at 2072.493 kb on - strand at 2072.544 kb on + strand at 2072.544 kb on + strand at 2072.544 kb on + strand at 2072.562 kb on - strand at 2072.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 2,070,294 - Shewana3_1755 0.85 -2.1 2,070,451 - -1.5 2,070,451 - +0.6 2,070,463 - aat Shewana3_1756 0.11 -1.9 2,070,510 - aat Shewana3_1756 0.17 -0.7 2,071,334 + Shewana3_1757 0.35 +1.4 2,071,398 - Shewana3_1757 0.49 +2.0 2,071,435 - Shewana3_1757 0.57 +2.0 2,071,780 + Shewana3_1758 0.13 +0.5 2,071,795 + Shewana3_1758 0.15 +0.6 2,072,228 - Shewana3_1758 0.72 +1.0 2,072,421 + +1.4 2,072,439 - +0.7 2,072,485 + -0.0 2,072,493 - +1.0 2,072,544 + -0.0 2,072,544 + +1.0 2,072,544 + -0.0 2,072,562 - +1.2 2,072,599 - -0.0
Or see this region's nucleotide sequence