Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1748
Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.004 vol% |
---|---|---|---|---|---|
remove | |||||
2,061,995 | - | -0.3 | |||
2,062,212 | - | Shewana3_1748 | 0.11 | +0.4 | |
2,062,240 | + | Shewana3_1748 | 0.17 | -1.5 | |
2,062,348 | + | Shewana3_1748 | 0.39 | +0.7 | |
2,062,348 | + | Shewana3_1748 | 0.39 | +1.5 | |
2,062,496 | - | Shewana3_1748 | 0.69 | +0.5 | |
2,062,598 | + | Shewana3_1748 | 0.89 | +0.4 | |
2,062,678 | + | -0.8 | |||
2,062,793 | + | -0.3 | |||
2,062,966 | - | Shewana3_1749 | 0.30 | +2.0 | |
2,063,049 | - | Shewana3_1749 | 0.40 | +0.3 | |
2,063,127 | - | Shewana3_1749 | 0.50 | +1.3 | |
2,063,141 | - | Shewana3_1749 | 0.52 | -0.4 | |
2,063,318 | - | Shewana3_1749 | 0.73 | +0.4 | |
2,063,345 | + | Shewana3_1749 | 0.77 | -0.4 | |
2,063,345 | - | Shewana3_1749 | 0.77 | -1.2 | |
2,063,424 | - | Shewana3_1749 | 0.87 | +0.2 | |
2,063,468 | + | -0.3 | |||
2,063,546 | - | -1.2 | |||
2,063,598 | + | +2.1 | |||
2,063,598 | + | -1.3 | |||
2,063,598 | + | +0.2 | |||
2,063,598 | + | +2.0 | |||
2,063,598 | + | +1.2 | |||
2,063,606 | - | -1.3 |
Or see this region's nucleotide sequence