Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1576 and Shewana3_1577 overlap by 1 nucleotides Shewana3_1577 and Shewana3_1578 are separated by 142 nucleotides Shewana3_1578 and Shewana3_1579 are separated by 236 nucleotides
Shewana3_1576: Shewana3_1576 - cyclic nucleotide-binding protein (RefSeq), at 1,844,556 to 1,846,418
_1576
Shewana3_1577: Shewana3_1577 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 1,846,418 to 1,847,104
_1577
Shewana3_1578: Shewana3_1578 - MarR family transcriptional regulator (RefSeq), at 1,847,247 to 1,847,672
_1578
Shewana3_1579: Shewana3_1579 - alcohol dehydrogenase (RefSeq), at 1,847,909 to 1,848,904
_1579
Position (kb)
1847
1848 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1846.296 kb on - strand at 1846.437 kb on + strand at 1846.437 kb on + strand at 1846.501 kb on - strand, within Shewana3_1577 at 1846.570 kb on + strand, within Shewana3_1577 at 1846.605 kb on + strand, within Shewana3_1577 at 1846.677 kb on + strand, within Shewana3_1577 at 1846.677 kb on + strand, within Shewana3_1577 at 1846.685 kb on - strand, within Shewana3_1577 at 1846.865 kb on - strand, within Shewana3_1577 at 1846.938 kb on + strand, within Shewana3_1577 at 1846.944 kb on + strand, within Shewana3_1577 at 1846.946 kb on - strand, within Shewana3_1577 at 1847.067 kb on + strand at 1847.075 kb on - strand at 1847.479 kb on - strand, within Shewana3_1578 at 1847.554 kb on + strand, within Shewana3_1578 at 1847.605 kb on - strand, within Shewana3_1578 at 1847.644 kb on - strand at 1847.962 kb on + strand at 1848.171 kb on + strand, within Shewana3_1579 at 1848.179 kb on - strand, within Shewana3_1579 at 1848.311 kb on + strand, within Shewana3_1579 at 1848.387 kb on - strand, within Shewana3_1579 at 1848.446 kb on - strand, within Shewana3_1579
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 1,846,296 - +1.9 1,846,437 + -0.5 1,846,437 + +0.9 1,846,501 - Shewana3_1577 0.12 +1.1 1,846,570 + Shewana3_1577 0.22 +0.4 1,846,605 + Shewana3_1577 0.27 -0.1 1,846,677 + Shewana3_1577 0.38 +2.9 1,846,677 + Shewana3_1577 0.38 +1.9 1,846,685 - Shewana3_1577 0.39 +0.9 1,846,865 - Shewana3_1577 0.65 -1.1 1,846,938 + Shewana3_1577 0.76 +0.0 1,846,944 + Shewana3_1577 0.77 -0.4 1,846,946 - Shewana3_1577 0.77 -0.1 1,847,067 + +1.9 1,847,075 - +1.9 1,847,479 - Shewana3_1578 0.54 -1.2 1,847,554 + Shewana3_1578 0.72 +1.9 1,847,605 - Shewana3_1578 0.84 -0.6 1,847,644 - +1.2 1,847,962 + +0.2 1,848,171 + Shewana3_1579 0.26 -0.3 1,848,179 - Shewana3_1579 0.27 -0.9 1,848,311 + Shewana3_1579 0.40 +0.4 1,848,387 - Shewana3_1579 0.48 -0.1 1,848,446 - Shewana3_1579 0.54 -0.1
Or see this region's nucleotide sequence