Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1363 and Shewana3_1364 overlap by 8 nucleotides Shewana3_1364 and Shewana3_1365 are separated by 64 nucleotides Shewana3_1365 and Shewana3_1366 overlap by 17 nucleotides Shewana3_1366 and Shewana3_1367 are separated by 7 nucleotides
Shewana3_1363: Shewana3_1363 - chemotaxis-specific methylesterase (RefSeq), at 1,576,442 to 1,577,566
_1363
Shewana3_1364: Shewana3_1364 - hypothetical protein (RefSeq), at 1,577,559 to 1,578,095
_1364
Shewana3_1365: Shewana3_1365 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,578,160 to 1,578,951
_1365
Shewana3_1366: Shewana3_1366 - CheW protein (RefSeq), at 1,578,935 to 1,579,942
_1366
Shewana3_1367: Shewana3_1367 - CheW protein (RefSeq), at 1,579,950 to 1,580,444
_1367
Position (kb)
1578
1579 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1577.296 kb on + strand, within Shewana3_1363 at 1577.377 kb on + strand, within Shewana3_1363 at 1577.557 kb on - strand at 1577.704 kb on - strand, within Shewana3_1364 at 1577.836 kb on + strand, within Shewana3_1364 at 1577.844 kb on - strand, within Shewana3_1364 at 1578.064 kb on + strand at 1578.107 kb on + strand at 1578.254 kb on - strand, within Shewana3_1365 at 1578.293 kb on + strand, within Shewana3_1365 at 1578.402 kb on - strand, within Shewana3_1365 at 1578.453 kb on + strand, within Shewana3_1365 at 1578.485 kb on + strand, within Shewana3_1365 at 1578.600 kb on - strand, within Shewana3_1365 at 1578.804 kb on + strand, within Shewana3_1365 at 1578.809 kb on - strand, within Shewana3_1365 at 1578.814 kb on - strand, within Shewana3_1365 at 1578.997 kb on + strand at 1579.004 kb on + strand at 1579.135 kb on - strand, within Shewana3_1366 at 1579.161 kb on + strand, within Shewana3_1366 at 1579.270 kb on + strand, within Shewana3_1366 at 1579.319 kb on - strand, within Shewana3_1366 at 1579.387 kb on + strand, within Shewana3_1366 at 1579.437 kb on + strand, within Shewana3_1366 at 1579.534 kb on - strand, within Shewana3_1366 at 1579.632 kb on + strand, within Shewana3_1366 at 1579.768 kb on + strand, within Shewana3_1366 at 1579.883 kb on + strand at 1579.913 kb on + strand at 1579.913 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 1,577,296 + Shewana3_1363 0.76 -0.0 1,577,377 + Shewana3_1363 0.83 +1.3 1,577,557 - -0.6 1,577,704 - Shewana3_1364 0.27 +1.7 1,577,836 + Shewana3_1364 0.52 -0.5 1,577,844 - Shewana3_1364 0.53 -0.9 1,578,064 + -0.2 1,578,107 + +0.5 1,578,254 - Shewana3_1365 0.12 -0.3 1,578,293 + Shewana3_1365 0.17 -0.8 1,578,402 - Shewana3_1365 0.31 +0.2 1,578,453 + Shewana3_1365 0.37 +1.4 1,578,485 + Shewana3_1365 0.41 +1.0 1,578,600 - Shewana3_1365 0.56 +0.7 1,578,804 + Shewana3_1365 0.81 -1.4 1,578,809 - Shewana3_1365 0.82 -0.7 1,578,814 - Shewana3_1365 0.83 -2.1 1,578,997 + -0.8 1,579,004 + +0.5 1,579,135 - Shewana3_1366 0.20 +0.7 1,579,161 + Shewana3_1366 0.22 -2.3 1,579,270 + Shewana3_1366 0.33 +0.4 1,579,319 - Shewana3_1366 0.38 +1.7 1,579,387 + Shewana3_1366 0.45 +0.1 1,579,437 + Shewana3_1366 0.50 -0.4 1,579,534 - Shewana3_1366 0.59 -1.0 1,579,632 + Shewana3_1366 0.69 +0.7 1,579,768 + Shewana3_1366 0.83 +2.0 1,579,883 + +0.6 1,579,913 + +0.6 1,579,913 + +0.1
Or see this region's nucleotide sequence