Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1133
Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.004 vol% |
---|---|---|---|---|---|
remove | |||||
1,337,601 | + | +0.3 | |||
1,337,630 | - | +0.2 | |||
1,337,632 | + | -0.3 | |||
1,337,855 | + | +0.2 | |||
1,337,952 | - | +0.9 | |||
1,338,065 | + | -1.3 | |||
1,338,121 | + | -2.3 | |||
1,338,205 | + | +0.6 | |||
1,338,265 | - | -0.3 | |||
1,338,321 | - | -0.8 | |||
1,338,321 | - | +0.4 | |||
1,338,321 | - | +0.5 | |||
1,338,339 | + | -1.4 | |||
1,338,373 | - | +1.1 | |||
1,338,445 | + | -1.7 | |||
1,338,484 | + | +0.4 | |||
1,338,492 | - | -0.1 | |||
1,338,569 | + | -1.5 | |||
1,338,585 | - | +3.2 | |||
1,338,688 | - | Shewana3_1133 | 0.28 | -0.5 | |
1,339,031 | + | +0.0 | |||
1,339,039 | - | +1.5 | |||
1,339,228 | - | -1.6 | |||
1,339,320 | + | Shewana3_1134 | 0.11 | +0.8 | |
1,339,336 | + | Shewana3_1134 | 0.14 | +1.2 | |
1,339,435 | - | Shewana3_1134 | 0.28 | +0.1 | |
1,339,640 | - | Shewana3_1134 | 0.58 | -3.8 | |
1,339,719 | - | Shewana3_1134 | 0.69 | -0.4 | |
1,339,778 | + | Shewana3_1134 | 0.78 | +0.8 | |
1,339,778 | + | Shewana3_1134 | 0.78 | +0.4 | |
1,339,917 | - | -2.1 | |||
1,339,943 | - | -0.6 |
Or see this region's nucleotide sequence