Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1059
Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.004 vol% |
---|---|---|---|---|---|
remove | |||||
1,241,294 | + | Shewana3_1058 | 0.53 | +0.4 | |
1,241,791 | - | Shewana3_1058 | 0.90 | -0.7 | |
1,241,801 | + | +0.1 | |||
1,241,806 | + | -0.2 | |||
1,241,809 | - | -0.1 | |||
1,241,809 | - | +0.0 | |||
1,241,830 | - | +0.2 | |||
1,241,882 | + | +0.5 | |||
1,242,200 | + | Shewana3_1059 | 0.56 | -0.2 | |
1,242,200 | + | Shewana3_1059 | 0.56 | -2.2 | |
1,242,427 | + | -1.2 | |||
1,242,427 | + | -0.2 | |||
1,242,427 | + | +1.6 | |||
1,242,613 | - | +0.4 | |||
1,242,749 | + | Shewana3_1060 | 0.14 | +1.5 | |
1,242,771 | - | Shewana3_1060 | 0.15 | +0.2 | |
1,242,771 | - | Shewana3_1060 | 0.15 | +0.3 | |
1,242,775 | + | Shewana3_1060 | 0.15 | -1.6 | |
1,242,818 | + | Shewana3_1060 | 0.18 | +2.5 | |
1,242,818 | + | Shewana3_1060 | 0.18 | +0.2 | |
1,242,818 | + | Shewana3_1060 | 0.18 | +0.2 | |
1,243,028 | + | Shewana3_1060 | 0.29 | -0.6 |
Or see this region's nucleotide sequence