Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1031

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinfB and rbfA are separated by 62 nucleotidesrbfA and Shewana3_1032 overlap by 1 nucleotides Shewana3_1030: infB - translation initiation factor IF-2 (RefSeq), at 1,202,214 to 1,204,883 infB Shewana3_1031: rbfA - ribosome-binding factor A (RefSeq), at 1,204,946 to 1,205,386 rbfA Shewana3_1032: Shewana3_1032 - tRNA pseudouridine synthase B (RefSeq), at 1,205,386 to 1,206,339 _1032 Position (kb) 1204 1205 1206Strain fitness (log2 ratio) -2 -1 0 1at 1205.293 kb on - strand, within rbfAat 1205.358 kb on + strandat 1205.667 kb on + strand, within Shewana3_1032at 1206.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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1,205,293 - rbfA Shewana3_1031 0.79 -2.0
1,205,358 + -0.4
1,205,667 + Shewana3_1032 0.29 -0.1
1,206,307 + +0.4

Or see this region's nucleotide sequence