Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0992
Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.004 vol% |
---|---|---|---|---|---|
remove | |||||
1,161,637 | - | Shewana3_0991 | 0.54 | +2.2 | |
1,162,240 | - | -0.9 | |||
1,162,310 | - | -1.9 | |||
1,162,404 | - | Shewana3_0992 | 0.10 | +0.8 | |
1,162,438 | + | Shewana3_0992 | 0.14 | -0.2 | |
1,162,503 | - | Shewana3_0992 | 0.22 | -0.2 | |
1,162,580 | - | Shewana3_0992 | 0.31 | -1.4 | |
1,162,605 | + | Shewana3_0992 | 0.34 | +1.8 | |
1,162,605 | + | Shewana3_0992 | 0.34 | +0.8 | |
1,162,801 | - | Shewana3_0992 | 0.57 | -0.9 | |
1,162,902 | + | Shewana3_0992 | 0.69 | +1.8 | |
1,162,910 | - | Shewana3_0992 | 0.70 | -0.2 | |
1,162,910 | - | Shewana3_0992 | 0.70 | +0.8 | |
1,163,303 | - | Shewana3_0993 | 0.15 | +0.4 | |
1,163,365 | - | Shewana3_0993 | 0.21 | -1.6 | |
1,163,617 | + | Shewana3_0993 | 0.44 | -0.2 | |
1,163,723 | - | Shewana3_0993 | 0.54 | +0.7 | |
1,163,762 | + | Shewana3_0993 | 0.58 | +0.8 | |
1,163,883 | - | Shewana3_0993 | 0.69 | -3.7 | |
1,164,008 | + | Shewana3_0993 | 0.81 | +1.8 | |
1,164,160 | - | +0.8 |
Or see this region's nucleotide sequence