Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0891 and Shewana3_0892 are separated by 247 nucleotides Shewana3_0892 and Shewana3_0893 are separated by 12 nucleotides
Shewana3_0891: Shewana3_0891 - AraC family transcriptional regulator (RefSeq), at 1,037,402 to 1,038,280
_0891
Shewana3_0892: Shewana3_0892 - phosphate transporter (RefSeq), at 1,038,528 to 1,039,997
_0892
Shewana3_0893: Shewana3_0893 - hypothetical protein (RefSeq), at 1,040,010 to 1,040,960
_0893
Position (kb)
1038
1039
1040 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1037.578 kb on + strand, within Shewana3_0891 at 1037.617 kb on + strand, within Shewana3_0891 at 1037.644 kb on + strand, within Shewana3_0891 at 1037.780 kb on - strand, within Shewana3_0891 at 1038.116 kb on + strand, within Shewana3_0891 at 1038.158 kb on - strand, within Shewana3_0891 at 1038.211 kb on + strand at 1038.366 kb on + strand at 1038.565 kb on - strand at 1038.748 kb on + strand, within Shewana3_0892 at 1038.964 kb on + strand, within Shewana3_0892 at 1038.964 kb on + strand, within Shewana3_0892 at 1038.964 kb on + strand, within Shewana3_0892 at 1038.972 kb on - strand, within Shewana3_0892 at 1039.076 kb on + strand, within Shewana3_0892 at 1039.238 kb on + strand, within Shewana3_0892 at 1039.388 kb on - strand, within Shewana3_0892 at 1039.437 kb on - strand, within Shewana3_0892 at 1039.507 kb on + strand, within Shewana3_0892 at 1039.679 kb on - strand, within Shewana3_0892 at 1039.687 kb on + strand, within Shewana3_0892 at 1039.842 kb on - strand, within Shewana3_0892 at 1039.925 kb on + strand at 1039.944 kb on + strand at 1039.959 kb on + strand at 1040.207 kb on + strand, within Shewana3_0893 at 1040.429 kb on - strand, within Shewana3_0893 at 1040.526 kb on + strand, within Shewana3_0893 at 1040.749 kb on - strand, within Shewana3_0893
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 1,037,578 + Shewana3_0891 0.20 -0.1 1,037,617 + Shewana3_0891 0.24 -0.3 1,037,644 + Shewana3_0891 0.28 -1.4 1,037,780 - Shewana3_0891 0.43 +0.8 1,038,116 + Shewana3_0891 0.81 +1.4 1,038,158 - Shewana3_0891 0.86 -1.2 1,038,211 + +0.8 1,038,366 + -0.2 1,038,565 - +0.8 1,038,748 + Shewana3_0892 0.15 -3.2 1,038,964 + Shewana3_0892 0.30 +2.3 1,038,964 + Shewana3_0892 0.30 -0.9 1,038,964 + Shewana3_0892 0.30 +1.0 1,038,972 - Shewana3_0892 0.30 +0.2 1,039,076 + Shewana3_0892 0.37 +0.1 1,039,238 + Shewana3_0892 0.48 -0.3 1,039,388 - Shewana3_0892 0.59 +0.8 1,039,437 - Shewana3_0892 0.62 -0.6 1,039,507 + Shewana3_0892 0.67 -0.2 1,039,679 - Shewana3_0892 0.78 -1.8 1,039,687 + Shewana3_0892 0.79 -1.4 1,039,842 - Shewana3_0892 0.89 +1.8 1,039,925 + +1.3 1,039,944 + -0.1 1,039,959 + -0.6 1,040,207 + Shewana3_0893 0.21 +1.1 1,040,429 - Shewana3_0893 0.44 +0.0 1,040,526 + Shewana3_0893 0.54 -1.3 1,040,749 - Shewana3_0893 0.78 +0.7
Or see this region's nucleotide sequence