Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0871 and Shewana3_0872 are separated by 41 nucleotides Shewana3_0872 and Shewana3_0873 are separated by 264 nucleotides
Shewana3_0871: Shewana3_0871 - protoporphyrinogen oxidase (RefSeq), at 1,017,066 to 1,017,587
_0871
Shewana3_0872: Shewana3_0872 - hypothetical protein (RefSeq), at 1,017,629 to 1,018,156
_0872
Shewana3_0873: Shewana3_0873 - putative lipoprotein (RefSeq), at 1,018,421 to 1,019,428
_0873
Position (kb)
1017
1018
1019 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1016.694 kb on + strand at 1016.956 kb on - strand at 1017.147 kb on + strand, within Shewana3_0871 at 1017.157 kb on + strand, within Shewana3_0871 at 1017.243 kb on + strand, within Shewana3_0871 at 1017.250 kb on + strand, within Shewana3_0871 at 1017.414 kb on - strand, within Shewana3_0871 at 1017.714 kb on + strand, within Shewana3_0872 at 1017.746 kb on - strand, within Shewana3_0872 at 1017.746 kb on - strand, within Shewana3_0872 at 1017.799 kb on - strand, within Shewana3_0872 at 1017.916 kb on + strand, within Shewana3_0872 at 1017.916 kb on + strand, within Shewana3_0872 at 1017.955 kb on + strand, within Shewana3_0872 at 1017.968 kb on - strand, within Shewana3_0872 at 1018.001 kb on + strand, within Shewana3_0872 at 1018.290 kb on + strand at 1018.298 kb on - strand at 1018.335 kb on + strand at 1018.490 kb on - strand at 1018.702 kb on + strand, within Shewana3_0873 at 1019.004 kb on + strand, within Shewana3_0873 at 1019.012 kb on - strand, within Shewana3_0873
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 1,016,694 + -2.9 1,016,956 - +0.9 1,017,147 + Shewana3_0871 0.16 -0.2 1,017,157 + Shewana3_0871 0.17 +0.3 1,017,243 + Shewana3_0871 0.34 +0.5 1,017,250 + Shewana3_0871 0.35 -3.0 1,017,414 - Shewana3_0871 0.67 -0.7 1,017,714 + Shewana3_0872 0.16 +0.8 1,017,746 - Shewana3_0872 0.22 +1.4 1,017,746 - Shewana3_0872 0.22 -0.6 1,017,799 - Shewana3_0872 0.32 -3.3 1,017,916 + Shewana3_0872 0.54 +0.1 1,017,916 + Shewana3_0872 0.54 -0.7 1,017,955 + Shewana3_0872 0.62 -0.8 1,017,968 - Shewana3_0872 0.64 -1.0 1,018,001 + Shewana3_0872 0.70 +0.1 1,018,290 + +0.1 1,018,298 - -1.6 1,018,335 + +0.5 1,018,490 - -2.0 1,018,702 + Shewana3_0873 0.28 -0.4 1,019,004 + Shewana3_0873 0.58 +0.3 1,019,012 - Shewana3_0873 0.59 -1.1
Or see this region's nucleotide sequence