Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0638 and Shewana3_0639 overlap by 1 nucleotides Shewana3_0639 and Shewana3_0640 are separated by 42 nucleotides
Shewana3_0638: Shewana3_0638 - smc-like chromosome partitioning protein (DUF3584) <small>(from data)</small>, at 751,959 to 755,630
_0638
Shewana3_0639: Shewana3_0639 - predicted chromosome partitioning protein (with smc-like Shewana3_0638) <small>(from data)</small>, at 755,630 to 756,295
_0639
Shewana3_0640: Shewana3_0640 - predicted chromosome partitioning protein (with smc-like Shewana3_0638) <small>(from data)</small>, at 756,338 to 757,558
_0640
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1
2 at 754.696 kb on - strand, within Shewana3_0638 at 754.754 kb on + strand, within Shewana3_0638 at 754.807 kb on + strand, within Shewana3_0638 at 754.950 kb on + strand, within Shewana3_0638 at 755.027 kb on + strand, within Shewana3_0638 at 755.097 kb on + strand, within Shewana3_0638 at 755.199 kb on + strand, within Shewana3_0638 at 755.199 kb on + strand, within Shewana3_0638 at 755.199 kb on + strand, within Shewana3_0638 at 755.207 kb on - strand, within Shewana3_0638 at 755.309 kb on + strand at 755.425 kb on - strand at 755.513 kb on - strand at 755.578 kb on - strand at 755.642 kb on - strand at 755.695 kb on - strand at 755.784 kb on - strand, within Shewana3_0639 at 755.935 kb on + strand, within Shewana3_0639 at 756.164 kb on - strand, within Shewana3_0639 at 756.164 kb on - strand, within Shewana3_0639 at 756.242 kb on + strand at 756.442 kb on + strand at 756.515 kb on - strand, within Shewana3_0640 at 756.553 kb on + strand, within Shewana3_0640 at 756.558 kb on + strand, within Shewana3_0640 at 756.634 kb on + strand, within Shewana3_0640 at 756.662 kb on - strand, within Shewana3_0640 at 756.727 kb on + strand, within Shewana3_0640 at 756.747 kb on + strand, within Shewana3_0640 at 756.905 kb on - strand, within Shewana3_0640 at 757.034 kb on + strand, within Shewana3_0640 at 757.133 kb on + strand, within Shewana3_0640 at 757.228 kb on + strand, within Shewana3_0640 at 757.255 kb on + strand, within Shewana3_0640 at 757.257 kb on + strand, within Shewana3_0640
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 754,696 - Shewana3_0638 0.75 -0.1 754,754 + Shewana3_0638 0.76 +1.0 754,807 + Shewana3_0638 0.78 +1.4 754,950 + Shewana3_0638 0.81 +0.5 755,027 + Shewana3_0638 0.84 +1.4 755,097 + Shewana3_0638 0.85 +2.0 755,199 + Shewana3_0638 0.88 +0.3 755,199 + Shewana3_0638 0.88 +0.2 755,199 + Shewana3_0638 0.88 -0.7 755,207 - Shewana3_0638 0.88 -1.8 755,309 + +0.2 755,425 - -0.0 755,513 - +2.5 755,578 - -0.3 755,642 - -1.2 755,695 - +0.6 755,784 - Shewana3_0639 0.23 +1.9 755,935 + Shewana3_0639 0.46 +1.1 756,164 - Shewana3_0639 0.80 +1.7 756,164 - Shewana3_0639 0.80 +0.5 756,242 + -0.3 756,442 + +0.5 756,515 - Shewana3_0640 0.14 -0.7 756,553 + Shewana3_0640 0.18 -0.5 756,558 + Shewana3_0640 0.18 +1.1 756,634 + Shewana3_0640 0.24 +1.9 756,662 - Shewana3_0640 0.27 +0.6 756,727 + Shewana3_0640 0.32 -0.1 756,747 + Shewana3_0640 0.33 -0.2 756,905 - Shewana3_0640 0.46 -0.4 757,034 + Shewana3_0640 0.57 -0.4 757,133 + Shewana3_0640 0.65 -0.3 757,228 + Shewana3_0640 0.73 +0.2 757,255 + Shewana3_0640 0.75 +0.8 757,257 + Shewana3_0640 0.75 +0.5
Or see this region's nucleotide sequence