Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0568 and Shewana3_0569 are separated by 43 nucleotides Shewana3_0569 and Shewana3_0570 are separated by 57 nucleotides Shewana3_0570 and Shewana3_0571 are separated by 18 nucleotides
Shewana3_0568: Shewana3_0568 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq), at 661,022 to 661,804
_0568
Shewana3_0569: Shewana3_0569 - hypothetical protein (RefSeq), at 661,848 to 662,255
_0569
Shewana3_0570: Shewana3_0570 - diguanylate cyclase (RefSeq), at 662,313 to 663,287
_0570
Shewana3_0571: Shewana3_0571 - response regulator receiver protein (RefSeq), at 663,306 to 664,301
_0571
Position (kb) 662
663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 661.375 kb on + strand, within Shewana3_0568 at 661.538 kb on - strand, within Shewana3_0568 at 661.563 kb on + strand, within Shewana3_0568 at 661.635 kb on + strand, within Shewana3_0568 at 661.709 kb on + strand, within Shewana3_0568 at 662.345 kb on - strand at 662.390 kb on - strand at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.444 kb on + strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.452 kb on - strand, within Shewana3_0570 at 662.529 kb on + strand, within Shewana3_0570 at 662.582 kb on - strand, within Shewana3_0570 at 662.627 kb on + strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.707 kb on - strand, within Shewana3_0570 at 662.801 kb on + strand, within Shewana3_0570 at 662.848 kb on + strand, within Shewana3_0570 at 663.180 kb on + strand, within Shewana3_0570 at 663.326 kb on + strand at 663.480 kb on - strand, within Shewana3_0571 at 663.483 kb on + strand, within Shewana3_0571 at 663.527 kb on + strand, within Shewana3_0571 at 663.722 kb on + strand, within Shewana3_0571 at 663.724 kb on + strand, within Shewana3_0571 at 663.887 kb on + strand, within Shewana3_0571 at 664.109 kb on + strand, within Shewana3_0571 at 664.109 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.246 kb on - strand at 664.248 kb on - strand at 664.281 kb on + strand at 664.281 kb on + strand at 664.281 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 661,375 + Shewana3_0568 0.45 -0.1 661,538 - Shewana3_0568 0.66 -1.1 661,563 + Shewana3_0568 0.69 +0.5 661,635 + Shewana3_0568 0.78 -0.4 661,709 + Shewana3_0568 0.88 -0.1 662,345 - +0.3 662,390 - -0.2 662,444 + Shewana3_0570 0.13 -0.3 662,444 + Shewana3_0570 0.13 -1.7 662,444 + Shewana3_0570 0.13 -0.2 662,444 + Shewana3_0570 0.13 -0.4 662,444 + Shewana3_0570 0.13 -1.0 662,444 + Shewana3_0570 0.13 -2.0 662,452 - Shewana3_0570 0.14 +0.7 662,452 - Shewana3_0570 0.14 -0.9 662,452 - Shewana3_0570 0.14 +0.8 662,452 - Shewana3_0570 0.14 -0.5 662,529 + Shewana3_0570 0.22 -1.1 662,582 - Shewana3_0570 0.28 -0.2 662,627 + Shewana3_0570 0.32 +0.1 662,707 - Shewana3_0570 0.40 -0.2 662,707 - Shewana3_0570 0.40 -1.9 662,801 + Shewana3_0570 0.50 -0.5 662,848 + Shewana3_0570 0.55 -1.5 663,180 + Shewana3_0570 0.89 -2.1 663,326 + +0.7 663,480 - Shewana3_0571 0.17 -1.4 663,483 + Shewana3_0571 0.18 -1.3 663,527 + Shewana3_0571 0.22 +0.1 663,722 + Shewana3_0571 0.42 -0.5 663,724 + Shewana3_0571 0.42 +0.4 663,887 + Shewana3_0571 0.58 -0.3 664,109 + Shewana3_0571 0.81 +0.9 664,109 - Shewana3_0571 0.81 -0.6 664,166 - Shewana3_0571 0.86 -0.6 664,166 - Shewana3_0571 0.86 -0.9 664,166 - Shewana3_0571 0.86 +0.2 664,246 - +0.4 664,248 - +0.1 664,281 + -1.8 664,281 + -3.0 664,281 + -0.2
Or see this region's nucleotide sequence