Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ubiA and Shewana3_0471 are separated by 86 nucleotides Shewana3_0471 and Shewana3_0472 are separated by 67 nucleotides
Shewana3_0470: ubiA - 4-hydroxybenzoate octaprenyltransferase (RefSeq), at 547,026 to 547,886
ubiA
Shewana3_0471: Shewana3_0471 - hypothetical protein (RefSeq), at 547,973 to 548,398
_0471
Shewana3_0472: Shewana3_0472 - IS4 family transposase (RefSeq), at 548,466 to 550,079
_0472
Position (kb) 547
548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 547.888 kb on - strand at 547.927 kb on + strand at 548.042 kb on - strand, within Shewana3_0471 at 548.069 kb on + strand, within Shewana3_0471 at 548.091 kb on - strand, within Shewana3_0471 at 548.128 kb on + strand, within Shewana3_0471 at 548.143 kb on - strand, within Shewana3_0471 at 548.206 kb on + strand, within Shewana3_0471 at 548.214 kb on + strand, within Shewana3_0471 at 548.214 kb on - strand, within Shewana3_0471 at 548.216 kb on + strand, within Shewana3_0471 at 548.224 kb on - strand, within Shewana3_0471 at 548.263 kb on - strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.356 kb on + strand at 548.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 547,888 - -0.1 547,927 + -2.6 548,042 - Shewana3_0471 0.16 +0.5 548,069 + Shewana3_0471 0.23 -2.1 548,091 - Shewana3_0471 0.28 -1.3 548,128 + Shewana3_0471 0.36 -1.2 548,143 - Shewana3_0471 0.40 -0.2 548,206 + Shewana3_0471 0.55 -2.2 548,214 + Shewana3_0471 0.57 +0.4 548,214 - Shewana3_0471 0.57 -0.5 548,216 + Shewana3_0471 0.57 -0.9 548,224 - Shewana3_0471 0.59 +0.8 548,263 - Shewana3_0471 0.68 +0.1 548,307 + Shewana3_0471 0.78 -0.0 548,307 + Shewana3_0471 0.78 -0.4 548,307 + Shewana3_0471 0.78 -3.2 548,307 + Shewana3_0471 0.78 -0.0 548,307 + Shewana3_0471 0.78 +0.7 548,307 + Shewana3_0471 0.78 -1.2 548,356 + -0.1 548,364 - +0.3
Or see this region's nucleotide sequence