Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemC and cyaA are separated by 202 nucleotides cyaA and Shewana3_0388 are separated by 39 nucleotides Shewana3_0388 and Shewana3_0389 are separated by 67 nucleotides Shewana3_0389 and Shewana3_0390 are separated by 42 nucleotides
Shewana3_0386: hemC - porphobilinogen deaminase (RefSeq), at 446,502 to 447,434
hemC
Shewana3_0387: cyaA - adenylate cyclase (RefSeq), at 447,637 to 450,051
cyaA
Shewana3_0388: Shewana3_0388 - frataxin family protein (RefSeq), at 450,091 to 450,420
_0388
Shewana3_0389: Shewana3_0389 - hypothetical protein (RefSeq), at 450,488 to 450,682
_0389
Shewana3_0390: Shewana3_0390 - diaminopimelate decarboxylase (RefSeq), at 450,725 to 451,969
_0390
Position (kb) 447
448
449
450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 447.707 kb on - strand at 447.738 kb on - strand at 447.852 kb on - strand at 447.941 kb on - strand, within cyaA at 447.977 kb on - strand, within cyaA at 447.986 kb on + strand, within cyaA at 447.994 kb on - strand, within cyaA at 447.994 kb on - strand, within cyaA at 448.001 kb on - strand, within cyaA at 448.148 kb on + strand, within cyaA at 448.166 kb on - strand, within cyaA at 448.182 kb on - strand, within cyaA at 448.254 kb on + strand, within cyaA at 448.254 kb on + strand, within cyaA at 448.262 kb on - strand, within cyaA at 448.269 kb on + strand, within cyaA at 448.343 kb on - strand, within cyaA at 448.477 kb on - strand, within cyaA at 448.711 kb on + strand, within cyaA at 448.811 kb on + strand, within cyaA at 448.819 kb on - strand, within cyaA at 448.924 kb on - strand, within cyaA at 448.924 kb on - strand, within cyaA at 448.928 kb on + strand, within cyaA at 448.935 kb on + strand, within cyaA at 449.013 kb on + strand, within cyaA at 449.063 kb on - strand, within cyaA at 449.111 kb on - strand, within cyaA at 449.111 kb on - strand, within cyaA at 449.111 kb on - strand, within cyaA at 449.275 kb on - strand, within cyaA at 449.579 kb on + strand, within cyaA at 449.602 kb on + strand, within cyaA at 449.853 kb on + strand at 449.931 kb on + strand at 449.931 kb on + strand at 449.931 kb on + strand at 449.931 kb on + strand at 450.004 kb on - strand at 450.131 kb on - strand, within Shewana3_0388 at 450.142 kb on + strand, within Shewana3_0388 at 450.568 kb on + strand, within Shewana3_0389 at 450.568 kb on + strand, within Shewana3_0389 at 450.576 kb on - strand, within Shewana3_0389 at 450.589 kb on + strand, within Shewana3_0389 at 450.658 kb on + strand, within Shewana3_0389 at 450.746 kb on + strand at 450.755 kb on - strand at 450.793 kb on + strand at 450.796 kb on + strand at 450.806 kb on + strand at 450.823 kb on - strand at 450.839 kb on + strand at 450.899 kb on + strand, within Shewana3_0390 at 450.940 kb on - strand, within Shewana3_0390 at 450.999 kb on - strand, within Shewana3_0390 at 451.036 kb on + strand, within Shewana3_0390
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 447,707 - -0.3 447,738 - -2.1 447,852 - -0.5 447,941 - cyaA Shewana3_0387 0.13 -0.5 447,977 - cyaA Shewana3_0387 0.14 -1.1 447,986 + cyaA Shewana3_0387 0.14 -0.0 447,994 - cyaA Shewana3_0387 0.15 +0.2 447,994 - cyaA Shewana3_0387 0.15 -1.1 448,001 - cyaA Shewana3_0387 0.15 +0.4 448,148 + cyaA Shewana3_0387 0.21 -0.6 448,166 - cyaA Shewana3_0387 0.22 -0.7 448,182 - cyaA Shewana3_0387 0.23 -1.0 448,254 + cyaA Shewana3_0387 0.26 -1.8 448,254 + cyaA Shewana3_0387 0.26 -1.9 448,262 - cyaA Shewana3_0387 0.26 +0.3 448,269 + cyaA Shewana3_0387 0.26 -1.4 448,343 - cyaA Shewana3_0387 0.29 -0.6 448,477 - cyaA Shewana3_0387 0.35 -0.4 448,711 + cyaA Shewana3_0387 0.44 +0.1 448,811 + cyaA Shewana3_0387 0.49 +0.2 448,819 - cyaA Shewana3_0387 0.49 -0.8 448,924 - cyaA Shewana3_0387 0.53 -1.1 448,924 - cyaA Shewana3_0387 0.53 +0.6 448,928 + cyaA Shewana3_0387 0.53 +0.1 448,935 + cyaA Shewana3_0387 0.54 -0.4 449,013 + cyaA Shewana3_0387 0.57 -0.5 449,063 - cyaA Shewana3_0387 0.59 -1.5 449,111 - cyaA Shewana3_0387 0.61 -3.2 449,111 - cyaA Shewana3_0387 0.61 -1.7 449,111 - cyaA Shewana3_0387 0.61 -1.6 449,275 - cyaA Shewana3_0387 0.68 -1.0 449,579 + cyaA Shewana3_0387 0.80 -0.7 449,602 + cyaA Shewana3_0387 0.81 -0.5 449,853 + -0.9 449,931 + -0.5 449,931 + +0.4 449,931 + -0.1 449,931 + +0.4 450,004 - -0.4 450,131 - Shewana3_0388 0.12 +0.8 450,142 + Shewana3_0388 0.15 -1.4 450,568 + Shewana3_0389 0.41 -2.6 450,568 + Shewana3_0389 0.41 -0.2 450,576 - Shewana3_0389 0.45 -1.1 450,589 + Shewana3_0389 0.52 +0.3 450,658 + Shewana3_0389 0.87 +0.5 450,746 + -0.5 450,755 - -1.3 450,793 + -0.4 450,796 + -1.2 450,806 + +0.2 450,823 - -0.3 450,839 + +0.0 450,899 + Shewana3_0390 0.14 +0.0 450,940 - Shewana3_0390 0.17 -0.4 450,999 - Shewana3_0390 0.22 -1.5 451,036 + Shewana3_0390 0.25 -0.1
Or see this region's nucleotide sequence