Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0261 and Shewana3_0262 are separated by 149 nucleotides Shewana3_0262 and Shewana3_0263 are separated by 116 nucleotides Shewana3_0263 and Shewana3_0264 are separated by 311 nucleotides
Shewana3_0261: Shewana3_0261 - iron-containing alcohol dehydrogenase (RefSeq), at 292,460 to 293,617
_0261
Shewana3_0262: Shewana3_0262 - TetR family transcriptional regulator (RefSeq), at 293,767 to 294,363
_0262
Shewana3_0263: Shewana3_0263 - hypothetical protein (RefSeq), at 294,480 to 294,791
_0263
Shewana3_0264: Shewana3_0264 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 295,103 to 297,058
_0264
Position (kb) 294
295 Strain fitness (log2 ratio) -2
-1
0
1 at 293.539 kb on + strand at 293.539 kb on + strand at 293.628 kb on + strand at 293.805 kb on + strand at 293.805 kb on + strand at 293.813 kb on - strand at 293.972 kb on - strand, within Shewana3_0262 at 294.005 kb on + strand, within Shewana3_0262 at 294.070 kb on - strand, within Shewana3_0262 at 294.070 kb on - strand, within Shewana3_0262 at 294.130 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.191 kb on - strand, within Shewana3_0262 at 294.279 kb on - strand, within Shewana3_0262 at 294.642 kb on - strand, within Shewana3_0263 at 294.648 kb on - strand, within Shewana3_0263 at 294.718 kb on - strand, within Shewana3_0263 at 295.258 kb on + strand at 295.258 kb on + strand at 295.298 kb on - strand at 295.331 kb on + strand, within Shewana3_0264 at 295.458 kb on + strand, within Shewana3_0264 at 295.458 kb on + strand, within Shewana3_0264 at 295.463 kb on + strand, within Shewana3_0264 at 295.471 kb on + strand, within Shewana3_0264 at 295.498 kb on + strand, within Shewana3_0264 at 295.526 kb on + strand, within Shewana3_0264 at 295.614 kb on + strand, within Shewana3_0264 at 295.622 kb on - strand, within Shewana3_0264 at 295.645 kb on + strand, within Shewana3_0264 at 295.749 kb on + strand, within Shewana3_0264
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 293,539 + -0.1 293,539 + +0.2 293,628 + +0.5 293,805 + -0.0 293,805 + -0.9 293,813 - +0.6 293,972 - Shewana3_0262 0.34 +0.3 294,005 + Shewana3_0262 0.40 +0.0 294,070 - Shewana3_0262 0.51 +0.5 294,070 - Shewana3_0262 0.51 +0.2 294,130 - Shewana3_0262 0.61 +0.6 294,169 - Shewana3_0262 0.67 +0.2 294,169 - Shewana3_0262 0.67 +0.5 294,191 - Shewana3_0262 0.71 +0.1 294,279 - Shewana3_0262 0.86 +0.3 294,642 - Shewana3_0263 0.52 -0.4 294,648 - Shewana3_0263 0.54 -0.2 294,718 - Shewana3_0263 0.76 +0.1 295,258 + +1.3 295,258 + -2.7 295,298 - -2.2 295,331 + Shewana3_0264 0.12 +0.3 295,458 + Shewana3_0264 0.18 -0.3 295,458 + Shewana3_0264 0.18 -0.2 295,463 + Shewana3_0264 0.18 -0.0 295,471 + Shewana3_0264 0.19 +0.0 295,498 + Shewana3_0264 0.20 +0.2 295,526 + Shewana3_0264 0.22 -2.0 295,614 + Shewana3_0264 0.26 -0.8 295,622 - Shewana3_0264 0.27 +0.8 295,645 + Shewana3_0264 0.28 -0.3 295,749 + Shewana3_0264 0.33 +1.1
Or see this region's nucleotide sequence