Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4372 and Shewana3_4373 are separated by 91 nucleotides Shewana3_4373 and Shewana3_4374 overlap by 1 nucleotides Shewana3_4374 and Shewana3_4375 are separated by 105 nucleotides Shewana3_4375 and Shewana3_4376 are separated by 76 nucleotides Shewana3_4376 and Shewana3_4377 overlap by 23 nucleotides
Shewana3_4372: Shewana3_4372 - hypothetical protein (RefSeq), at 260,617 to 262,353
_4372
Shewana3_4373: Shewana3_4373 - hypothetical protein (RefSeq), at 262,445 to 262,816
_4373
Shewana3_4374: Shewana3_4374 - hypothetical protein (RefSeq), at 262,816 to 263,064
_4374
Shewana3_4375: Shewana3_4375 - hypothetical protein (RefSeq), at 263,170 to 263,847
_4375
Shewana3_4376: Shewana3_4376 - hypothetical protein (RefSeq), at 263,924 to 264,508
_4376
Shewana3_4377: Shewana3_4377 - phage integrase family protein (RefSeq), at 264,486 to 265,601
_4377
Position (kb) 263
264 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 262.268 kb on - strand at 262.394 kb on + strand at 262.533 kb on - strand, within Shewana3_4373 at 262.556 kb on - strand, within Shewana3_4373 at 262.744 kb on - strand, within Shewana3_4373 at 262.862 kb on - strand, within Shewana3_4374 at 262.873 kb on + strand, within Shewana3_4374 at 262.953 kb on + strand, within Shewana3_4374 at 263.024 kb on + strand, within Shewana3_4374 at 263.241 kb on + strand, within Shewana3_4375 at 263.341 kb on - strand, within Shewana3_4375 at 263.416 kb on - strand, within Shewana3_4375 at 263.702 kb on + strand, within Shewana3_4375 at 264.032 kb on - strand, within Shewana3_4376 at 264.057 kb on + strand, within Shewana3_4376 at 264.480 kb on + strand at 264.522 kb on - strand at 264.524 kb on + strand at 264.524 kb on + strand at 264.524 kb on + strand at 264.541 kb on + strand at 264.583 kb on + strand at 264.674 kb on + strand, within Shewana3_4377
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 262,268 - +0.5 262,394 + -1.2 262,533 - Shewana3_4373 0.24 -4.6 262,556 - Shewana3_4373 0.30 +1.2 262,744 - Shewana3_4373 0.80 -3.7 262,862 - Shewana3_4374 0.18 -1.4 262,873 + Shewana3_4374 0.23 -0.4 262,953 + Shewana3_4374 0.55 +1.8 263,024 + Shewana3_4374 0.84 +0.6 263,241 + Shewana3_4375 0.10 +0.8 263,341 - Shewana3_4375 0.25 -1.5 263,416 - Shewana3_4375 0.36 -0.1 263,702 + Shewana3_4375 0.78 -2.3 264,032 - Shewana3_4376 0.18 -0.7 264,057 + Shewana3_4376 0.23 +1.5 264,480 + +0.7 264,522 - -1.8 264,524 + -3.0 264,524 + +0.4 264,524 + -2.0 264,541 + -1.7 264,583 + +0.1 264,674 + Shewana3_4377 0.17 +0.0
Or see this region's nucleotide sequence