Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4366 and Shewana3_4367 are separated by 157 nucleotides Shewana3_4367 and Shewana3_4368 are separated by 205 nucleotides
Shewana3_4366: Shewana3_4366 - chromate resistance exported protein (RefSeq), at 254,610 to 255,548
_4366
Shewana3_4367: Shewana3_4367 - phage integrase family protein (RefSeq), at 255,706 to 256,713
_4367
Shewana3_4368: Shewana3_4368 - chromosome segregation ATPases-like protein (RefSeq), at 256,919 to 257,974
_4368
Position (kb) 255
256
257 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 254.857 kb on + strand, within Shewana3_4366 at 254.865 kb on - strand, within Shewana3_4366 at 254.941 kb on + strand, within Shewana3_4366 at 255.027 kb on - strand, within Shewana3_4366 at 255.081 kb on + strand, within Shewana3_4366 at 255.218 kb on + strand, within Shewana3_4366 at 255.450 kb on + strand, within Shewana3_4366 at 255.851 kb on + strand, within Shewana3_4367 at 255.851 kb on + strand, within Shewana3_4367 at 255.861 kb on + strand, within Shewana3_4367 at 255.871 kb on + strand, within Shewana3_4367 at 255.879 kb on - strand, within Shewana3_4367 at 256.105 kb on - strand, within Shewana3_4367 at 256.141 kb on - strand, within Shewana3_4367 at 256.191 kb on + strand, within Shewana3_4367 at 256.339 kb on - strand, within Shewana3_4367 at 256.351 kb on - strand, within Shewana3_4367 at 256.421 kb on + strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367 at 256.581 kb on - strand, within Shewana3_4367 at 256.634 kb on + strand at 256.949 kb on - strand at 257.076 kb on + strand, within Shewana3_4368 at 257.344 kb on + strand, within Shewana3_4368 at 257.471 kb on - strand, within Shewana3_4368
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 254,857 + Shewana3_4366 0.26 +1.3 254,865 - Shewana3_4366 0.27 +0.5 254,941 + Shewana3_4366 0.35 -0.3 255,027 - Shewana3_4366 0.44 +0.7 255,081 + Shewana3_4366 0.50 -0.3 255,218 + Shewana3_4366 0.65 +1.3 255,450 + Shewana3_4366 0.89 -0.3 255,851 + Shewana3_4367 0.14 -1.9 255,851 + Shewana3_4367 0.14 +0.0 255,861 + Shewana3_4367 0.15 -0.1 255,871 + Shewana3_4367 0.16 +0.1 255,879 - Shewana3_4367 0.17 +0.2 256,105 - Shewana3_4367 0.40 -0.8 256,141 - Shewana3_4367 0.43 +0.4 256,191 + Shewana3_4367 0.48 +0.1 256,339 - Shewana3_4367 0.63 -1.7 256,351 - Shewana3_4367 0.64 +0.0 256,421 + Shewana3_4367 0.71 -1.4 256,485 - Shewana3_4367 0.77 -0.7 256,485 - Shewana3_4367 0.77 +0.1 256,581 - Shewana3_4367 0.87 +0.2 256,634 + +0.3 256,949 - -0.1 257,076 + Shewana3_4368 0.15 -2.0 257,344 + Shewana3_4368 0.40 -4.5 257,471 - Shewana3_4368 0.52 -2.0
Or see this region's nucleotide sequence