Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4357 and Shewana3_4358 are separated by 857 nucleotides Shewana3_4358 and Shewana3_4359 are separated by 137 nucleotides Shewana3_4359 and Shewana3_4360 are separated by 511 nucleotides
Shewana3_4357: Shewana3_4357 - hypothetical protein (RefSeq), at 242,263 to 243,072
_4357
Shewana3_4358: Shewana3_4358 - phage integrase family protein (RefSeq), at 243,930 to 244,595
_4358
Shewana3_4359: Shewana3_4359 - hypothetical protein (RefSeq), at 244,733 to 245,080
_4359
Shewana3_4360: Shewana3_4360 - hypothetical protein (RefSeq), at 245,592 to 245,894
_4360
Position (kb) 243
244
245 Strain fitness (log2 ratio) -1
0
1 at 242.945 kb on + strand, within Shewana3_4357 at 243.462 kb on - strand at 243.495 kb on + strand at 243.695 kb on + strand at 243.890 kb on + strand at 244.132 kb on + strand, within Shewana3_4358 at 244.198 kb on + strand, within Shewana3_4358 at 244.443 kb on + strand, within Shewana3_4358 at 244.450 kb on + strand, within Shewana3_4358 at 244.458 kb on - strand, within Shewana3_4358 at 244.517 kb on - strand, within Shewana3_4358 at 244.555 kb on + strand at 244.666 kb on - strand at 245.105 kb on - strand at 245.255 kb on - strand at 245.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 242,945 + Shewana3_4357 0.84 -0.7 243,462 - -1.4 243,495 + -1.0 243,695 + +0.2 243,890 + -1.2 244,132 + Shewana3_4358 0.30 -1.3 244,198 + Shewana3_4358 0.40 -0.1 244,443 + Shewana3_4358 0.77 -1.2 244,450 + Shewana3_4358 0.78 -1.0 244,458 - Shewana3_4358 0.79 -0.7 244,517 - Shewana3_4358 0.88 -0.0 244,555 + +0.5 244,666 - +1.6 245,105 - +0.5 245,255 - +0.3 245,507 + -0.3
Or see this region's nucleotide sequence