Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4354

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4352 and Shewana3_4353 overlap by 8 nucleotidesShewana3_4353 and Shewana3_4354 are separated by 76 nucleotidesShewana3_4354 and Shewana3_4355 are separated by 1 nucleotides Shewana3_4352: Shewana3_4352 - hypothetical protein (RefSeq), at 236,921 to 238,486 _4352 Shewana3_4353: Shewana3_4353 - hypothetical protein (RefSeq), at 238,479 to 238,871 _4353 Shewana3_4354: Shewana3_4354 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 238,948 to 240,675 _4354 Shewana3_4355: Shewana3_4355 - hypothetical protein (RefSeq), at 240,677 to 241,708 _4355 Position (kb) 238 239 240 241Strain fitness (log2 ratio) -3 -2 -1 0 1at 237.995 kb on + strand, within Shewana3_4352at 238.003 kb on - strand, within Shewana3_4352at 238.004 kb on - strand, within Shewana3_4352at 238.041 kb on + strand, within Shewana3_4352at 238.041 kb on + strand, within Shewana3_4352at 238.041 kb on + strand, within Shewana3_4352at 238.041 kb on + strand, within Shewana3_4352at 238.049 kb on - strand, within Shewana3_4352at 238.049 kb on - strand, within Shewana3_4352at 238.117 kb on - strand, within Shewana3_4352at 238.231 kb on + strand, within Shewana3_4352at 238.231 kb on + strand, within Shewana3_4352at 238.239 kb on - strand, within Shewana3_4352at 238.239 kb on - strand, within Shewana3_4352at 238.239 kb on - strand, within Shewana3_4352at 238.269 kb on + strand, within Shewana3_4352at 238.269 kb on + strand, within Shewana3_4352at 238.269 kb on + strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.277 kb on - strand, within Shewana3_4352at 238.437 kb on - strandat 238.624 kb on + strand, within Shewana3_4353at 238.669 kb on - strand, within Shewana3_4353at 238.789 kb on - strand, within Shewana3_4353at 238.791 kb on - strand, within Shewana3_4353at 238.791 kb on - strand, within Shewana3_4353at 238.824 kb on - strand, within Shewana3_4353at 239.029 kb on - strandat 239.067 kb on - strandat 239.261 kb on + strand, within Shewana3_4354at 239.373 kb on + strand, within Shewana3_4354at 239.630 kb on - strand, within Shewana3_4354at 239.688 kb on + strand, within Shewana3_4354at 239.701 kb on + strand, within Shewana3_4354at 239.739 kb on - strand, within Shewana3_4354at 239.744 kb on + strand, within Shewana3_4354at 239.767 kb on - strand, within Shewana3_4354at 239.767 kb on - strand, within Shewana3_4354at 239.859 kb on + strand, within Shewana3_4354at 239.960 kb on + strand, within Shewana3_4354at 240.038 kb on - strand, within Shewana3_4354at 240.082 kb on - strand, within Shewana3_4354at 240.149 kb on + strand, within Shewana3_4354at 240.246 kb on + strand, within Shewana3_4354at 240.284 kb on + strand, within Shewana3_4354at 240.284 kb on - strand, within Shewana3_4354at 240.415 kb on + strand, within Shewana3_4354at 240.422 kb on - strand, within Shewana3_4354at 240.533 kb on - strandat 240.713 kb on + strandat 240.713 kb on + strandat 240.845 kb on - strand, within Shewana3_4355at 240.935 kb on - strand, within Shewana3_4355at 240.950 kb on - strand, within Shewana3_4355at 241.161 kb on + strand, within Shewana3_4355at 241.252 kb on + strand, within Shewana3_4355at 241.379 kb on - strand, within Shewana3_4355at 241.485 kb on + strand, within Shewana3_4355at 241.493 kb on - strand, within Shewana3_4355at 241.494 kb on + strand, within Shewana3_4355at 241.617 kb on - strandat 241.621 kb on - strandat 241.629 kb on - strandat 241.643 kb on + strandat 241.644 kb on + strandat 241.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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237,995 + Shewana3_4352 0.69 -0.9
238,003 - Shewana3_4352 0.69 -0.4
238,004 - Shewana3_4352 0.69 +0.4
238,041 + Shewana3_4352 0.72 -0.7
238,041 + Shewana3_4352 0.72 +0.3
238,041 + Shewana3_4352 0.72 +1.3
238,041 + Shewana3_4352 0.72 -1.9
238,049 - Shewana3_4352 0.72 +0.7
238,049 - Shewana3_4352 0.72 -0.3
238,117 - Shewana3_4352 0.76 +0.9
238,231 + Shewana3_4352 0.84 +0.3
238,231 + Shewana3_4352 0.84 -2.8
238,239 - Shewana3_4352 0.84 -0.1
238,239 - Shewana3_4352 0.84 +0.4
238,239 - Shewana3_4352 0.84 +0.1
238,269 + Shewana3_4352 0.86 -1.0
238,269 + Shewana3_4352 0.86 -0.7
238,269 + Shewana3_4352 0.86 -1.3
238,277 - Shewana3_4352 0.87 +0.0
238,277 - Shewana3_4352 0.87 -0.4
238,277 - Shewana3_4352 0.87 -0.4
238,277 - Shewana3_4352 0.87 -1.1
238,277 - Shewana3_4352 0.87 -1.0
238,437 - +0.3
238,624 + Shewana3_4353 0.37 +1.3
238,669 - Shewana3_4353 0.48 +1.3
238,789 - Shewana3_4353 0.79 +0.1
238,791 - Shewana3_4353 0.79 -0.6
238,791 - Shewana3_4353 0.79 +0.3
238,824 - Shewana3_4353 0.88 +0.2
239,029 - +0.3
239,067 - +0.6
239,261 + Shewana3_4354 0.18 -0.7
239,373 + Shewana3_4354 0.25 +1.3
239,630 - Shewana3_4354 0.39 +0.6
239,688 + Shewana3_4354 0.43 -2.0
239,701 + Shewana3_4354 0.44 -1.0
239,739 - Shewana3_4354 0.46 -0.1
239,744 + Shewana3_4354 0.46 +0.3
239,767 - Shewana3_4354 0.47 +0.3
239,767 - Shewana3_4354 0.47 +0.9
239,859 + Shewana3_4354 0.53 -1.9
239,960 + Shewana3_4354 0.59 +0.8
240,038 - Shewana3_4354 0.63 -0.3
240,082 - Shewana3_4354 0.66 -0.2
240,149 + Shewana3_4354 0.70 +0.1
240,246 + Shewana3_4354 0.75 +0.7
240,284 + Shewana3_4354 0.77 +0.6
240,284 - Shewana3_4354 0.77 +0.1
240,415 + Shewana3_4354 0.85 +0.4
240,422 - Shewana3_4354 0.85 +0.4
240,533 - +1.7
240,713 + -1.0
240,713 + -0.8
240,845 - Shewana3_4355 0.16 +0.7
240,935 - Shewana3_4355 0.25 +0.6
240,950 - Shewana3_4355 0.26 +0.2
241,161 + Shewana3_4355 0.47 +0.5
241,252 + Shewana3_4355 0.56 -0.3
241,379 - Shewana3_4355 0.68 -1.0
241,485 + Shewana3_4355 0.78 -2.3
241,493 - Shewana3_4355 0.79 -2.8
241,494 + Shewana3_4355 0.79 +1.1
241,617 - +0.2
241,621 - +0.1
241,629 - -0.5
241,643 + -1.3
241,644 + -0.5
241,652 - +0.5

Or see this region's nucleotide sequence