Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4160

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4159 and Shewana3_4160 are separated by 627 nucleotidesShewana3_4160 and Shewana3_4161 overlap by 4 nucleotidesShewana3_4161 and Shewana3_4162 are separated by 7 nucleotides Shewana3_4159: Shewana3_4159 - putative transposase (RefSeq), at 21,137 to 21,307 _4159 Shewana3_4160: Shewana3_4160 - S-adenosylhomocysteine hydrolase (RefSeq), at 21,935 to 22,345 _4160 Shewana3_4161: Shewana3_4161 - hypothetical protein (RefSeq), at 22,342 to 23,283 _4161 Shewana3_4162: Shewana3_4162 - type I restriction-modification system, M subunit (RefSeq), at 23,291 to 25,915 _4162 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 21.097 kb on - strandat 21.182 kb on + strand, within Shewana3_4159at 21.356 kb on - strandat 21.377 kb on - strandat 21.458 kb on - strandat 21.537 kb on + strandat 21.633 kb on + strandat 21.650 kb on + strandat 21.716 kb on - strandat 21.716 kb on - strandat 21.895 kb on - strandat 21.901 kb on - strandat 22.613 kb on - strand, within Shewana3_4161at 22.766 kb on + strand, within Shewana3_4161at 22.836 kb on + strand, within Shewana3_4161at 22.848 kb on + strand, within Shewana3_4161at 22.915 kb on + strand, within Shewana3_4161at 23.000 kb on + strand, within Shewana3_4161

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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21,097 - +0.5
21,182 + Shewana3_4159 0.26 +0.8
21,356 - +1.8
21,377 - +1.1
21,458 - +0.2
21,537 + +0.2
21,633 + -0.1
21,650 + -0.9
21,716 - +0.6
21,716 - -1.6
21,895 - -0.9
21,901 - +0.7
22,613 - Shewana3_4161 0.29 -2.6
22,766 + Shewana3_4161 0.45 -0.1
22,836 + Shewana3_4161 0.52 +0.4
22,848 + Shewana3_4161 0.54 -1.4
22,915 + Shewana3_4161 0.61 -0.5
23,000 + Shewana3_4161 0.70 -1.3

Or see this region's nucleotide sequence