Strain Fitness in Shewanella loihica PV-4 around Shew_3796

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
4,513,873	+				+0.3
4,513,873	-				-1.0
4,514,312	+				-0.8
4,514,332	+				-0.9
4,514,443	+		Shew_3795	0.26	-0.2
4,514,451	+		Shew_3795	0.28	+0.1
4,514,476	+		Shew_3795	0.34	+0.4
4,514,623	+		Shew_3795	0.68	+0.7
4,514,934	+				-0.3
4,514,998	-				-0.1
4,515,198	+		Shew_3796	0.11	-0.6
4,515,222	+		Shew_3796	0.12	+0.3
4,515,260	+		Shew_3796	0.13	-0.3
4,515,337	-		Shew_3796	0.15	+0.7
4,515,559	-		Shew_3796	0.23	-0.2
4,515,820	-		Shew_3796	0.31	-0.1
4,515,882	-		Shew_3796	0.33	+0.0
4,516,104	+		Shew_3796	0.40	-0.4
4,516,114	+		Shew_3796	0.40	-0.2
4,516,114	+		Shew_3796	0.40	-0.5
4,516,152	+		Shew_3796	0.41	+0.2
4,516,152	+		Shew_3796	0.41	+0.2
4,516,152	+		Shew_3796	0.41	-0.1
4,516,154	+		Shew_3796	0.42	-0.2
4,516,160	-		Shew_3796	0.42	+0.6
4,516,196	+		Shew_3796	0.43	-0.3
4,516,253	-		Shew_3796	0.45	-0.0
4,516,311	-		Shew_3796	0.47	-0.7
4,516,509	-		Shew_3796	0.53	+0.2
4,516,836	+		Shew_3796	0.63	+0.0
4,517,035	-		Shew_3796	0.70	-0.2
4,517,123	-		Shew_3796	0.73	+1.8
4,517,123	-		Shew_3796	0.73	+0.7
4,517,172	+		Shew_3796	0.74	+0.0
4,517,272	+		Shew_3796	0.77	-0.1
4,517,480	-		Shew_3796	0.84	-0.2
4,517,598	-		Shew_3796	0.88	+0.0
4,517,612	+		Shew_3796	0.88	-0.2
4,517,668	+		Shew_3796	0.90	-0.2
4,517,824	-				+0.1
4,517,933	+				+0.3
4,518,094	+				-0.0
4,518,155	+		Shew_3797	0.15	-1.8
4,518,392	+		Shew_3797	0.36	+0.2
4,518,392	+		Shew_3797	0.36	-1.1
4,518,438	-		Shew_3797	0.40	+0.2
4,518,665	+		Shew_3797	0.60	+0.4
4,518,700	-		Shew_3797	0.63	+0.0
4,518,726	-		Shew_3797	0.65	+0.1
4,518,781	-		Shew_3797	0.70	-0.2
4,518,800	+		Shew_3797	0.72	+0.3
4,518,898	-		Shew_3797	0.80	-0.1
4,518,898	-		Shew_3797	0.80	-2.5