Strain Fitness in Shewanella loihica PV-4 around Shew_3708

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
4,412,541	-				+0.1
4,412,705	-				-1.3
4,412,920	+		Shew_3708	0.39	-1.7
4,412,920	+		Shew_3708	0.39	-0.4
4,412,920	+		Shew_3708	0.39	-1.2
4,412,920	+		Shew_3708	0.39	+0.4
4,412,920	+		Shew_3708	0.39	+0.6
4,412,928	+		Shew_3708	0.40	-0.8
4,412,928	-		Shew_3708	0.40	-0.9
4,413,012	+		Shew_3708	0.53	-1.3
4,413,012	+		Shew_3708	0.53	-1.0
4,413,012	+		Shew_3708	0.53	-0.7
4,413,039	+		Shew_3708	0.57	-1.2
4,413,045	+		Shew_3708	0.58	+0.4
4,413,160	+		Shew_3708	0.76	-0.7
4,413,168	-		Shew_3708	0.77	-0.8
4,413,168	-		Shew_3708	0.77	-0.9
4,413,292	+				+0.1
4,413,718	+				+1.6
4,413,796	+				+1.8
4,413,898	-		Shew_3709	0.14	+2.3
4,414,097	-		Shew_3709	0.30	+1.7
4,414,140	-		Shew_3709	0.34	+1.9
4,414,160	+		Shew_3709	0.36	+1.5
4,414,168	-		Shew_3709	0.36	+2.0
4,414,178	-		Shew_3709	0.37	+2.0
4,414,311	+		Shew_3709	0.48	+1.3
4,414,319	-		Shew_3709	0.49	+2.1