Strain Fitness in Shewanella loihica PV-4 around Shew_2223

Experiment: Ceftazidime 5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2220 and Shew_2221 are separated by 17 nucleotidesShew_2221 and Shew_2222 are separated by 93 nucleotidesShew_2222 and Shew_2223 are separated by 119 nucleotidesShew_2223 and Shew_2224 are separated by 175 nucleotides Shew_2220: Shew_2220 - hypothetical protein (RefSeq), at 2,592,688 to 2,593,062 _2220 Shew_2221: Shew_2221 - hypothetical protein (RefSeq), at 2,593,080 to 2,593,373 _2221 Shew_2222: Shew_2222 - hypothetical protein (RefSeq), at 2,593,467 to 2,593,817 _2222 Shew_2223: Shew_2223 - YceI family protein (RefSeq), at 2,593,937 to 2,594,524 _2223 Shew_2224: Shew_2224 - DNA topoisomerase I (RefSeq), at 2,594,700 to 2,597,396 _2224 Position (kb) 2593 2594 2595Strain fitness (log2 ratio) -1 0 1at 2593.629 kb on + strand, within Shew_2222at 2594.337 kb on - strand, within Shew_2223at 2594.599 kb on + strandat 2595.120 kb on - strand, within Shew_2224

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml
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2,593,629 + Shew_2222 0.46 +0.2
2,594,337 - Shew_2223 0.68 -1.4
2,594,599 + +0.6
2,595,120 - Shew_2224 0.16 +1.2

Or see this region's nucleotide sequence