Strain Fitness in Shewanella loihica PV-4 around Shew_1694

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
1,947,150	+		Shew_1693	0.59	-0.1
1,947,163	-		Shew_1693	0.60	+0.5
1,947,176	+		Shew_1693	0.61	-0.2
1,947,184	-		Shew_1693	0.62	+0.2
1,947,184	-		Shew_1693	0.62	+0.2
1,947,190	+		Shew_1693	0.63	+0.1
1,947,196	+		Shew_1693	0.63	+0.1
1,947,198	-		Shew_1693	0.64	-0.9
1,947,198	-		Shew_1693	0.64	-0.4
1,947,259	+		Shew_1693	0.70	+0.5
1,947,283	+		Shew_1693	0.73	+0.3
1,947,283	+		Shew_1693	0.73	-0.2
1,947,283	+		Shew_1693	0.73	-0.5
1,947,283	+		Shew_1693	0.73	-0.1
1,947,283	+		Shew_1693	0.73	+0.9
1,947,283	+		Shew_1693	0.73	+0.8
1,947,291	-		Shew_1693	0.73	-0.0
1,947,291	-		Shew_1693	0.73	+0.0
1,947,291	-		Shew_1693	0.73	-0.9
1,947,291	-		Shew_1693	0.73	-0.4
1,947,308	+		Shew_1693	0.75	-0.5
1,947,308	+		Shew_1693	0.75	+1.2
1,947,308	+		Shew_1693	0.75	-0.5
1,947,308	+		Shew_1693	0.75	-0.2
1,947,315	+		Shew_1693	0.76	+0.1
1,947,316	-		Shew_1693	0.76	-0.2
1,947,378	+		Shew_1693	0.83	+1.2
1,947,386	-		Shew_1693	0.83	-0.4
1,947,393	-		Shew_1693	0.84	-0.8
1,947,441	-		Shew_1693	0.89	+0.1
1,947,633	-				-0.3
1,947,864	-				-3.3
1,947,941	+				+0.1
1,948,121	-				+0.0
1,948,198	+		Shew_1694	0.10	+1.7
1,948,206	-		Shew_1694	0.12	-0.4
1,948,251	-		Shew_1694	0.21	-1.6
1,948,256	-		Shew_1694	0.22	+0.6
1,948,285	+		Shew_1694	0.27	-0.2
1,948,293	-		Shew_1694	0.29	+0.5
1,948,387	-		Shew_1694	0.47	+0.4
1,948,434	-		Shew_1694	0.56	+0.8
1,948,544	-		Shew_1694	0.78	+0.3
1,948,722	-				+0.5
1,948,724	+				-1.7
1,948,724	+				-0.0
1,948,724	+				-0.0
1,948,724	+				-0.7
1,948,724	+				+0.1
1,948,724	+				+0.6
1,948,724	+				-0.1
1,948,724	+				+0.4
1,948,724	+				-2.9
1,948,724	+				-0.1
1,948,724	+				-0.0
1,948,724	+				+0.5
1,948,724	+				-0.1
1,948,724	+				+0.4
1,948,724	+				+1.0
1,948,732	-				+0.1
1,948,732	-				+0.6
1,948,732	-				+0.9
1,948,732	-				+0.2
1,948,732	-				+0.7
1,948,732	-				+0.2
1,948,732	-				+1.4
1,948,732	-				-0.9
1,948,732	-				-0.2
1,948,732	-				-0.4
1,948,732	-				-0.3
1,948,732	-				+0.6
1,948,732	-				-0.3
1,948,732	-				-0.2
1,948,787	+		Shew_1695	0.11	-0.5
1,948,795	-		Shew_1695	0.13	-0.6
1,948,795	-		Shew_1695	0.13	+0.2
1,948,795	-		Shew_1695	0.13	-0.3
1,948,795	-		Shew_1695	0.13	+0.8
1,949,031	-		Shew_1695	0.81	+0.1
1,949,093	+				-0.0
1,949,101	+				+0.3
1,949,101	-				+0.3
1,949,101	-				-1.7
1,949,101	+				+1.3
1,949,163	+				+0.8
1,949,166	-				+1.4
1,949,217	+				+0.2
1,949,217	+				+1.8
1,949,230	-				+0.2
1,949,231	-				-2.1
1,949,316	+				-0.0
1,949,324	-				-0.2
1,949,382	-				-0.0
1,949,518	+				-0.3
1,949,583	+				+1.5