Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1387 and Shew_1388 overlap by 8 nucleotides Shew_1388 and Shew_1389 are separated by 46 nucleotides Shew_1389 and Shew_1390 overlap by 17 nucleotides Shew_1390 and Shew_1391 are separated by 7 nucleotides
Shew_1387: Shew_1387 - chemotaxis-specific methylesterase (RefSeq), at 1,596,979 to 1,598,088
_1387
Shew_1388: Shew_1388 - hypothetical protein (RefSeq), at 1,598,081 to 1,598,704
_1388
Shew_1389: Shew_1389 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,598,751 to 1,599,542
_1389
Shew_1390: Shew_1390 - CheW protein (RefSeq), at 1,599,526 to 1,600,515
_1390
Shew_1391: Shew_1391 - CheW protein (RefSeq), at 1,600,523 to 1,601,017
_1391
Position (kb) 1598
1599
1600 Strain fitness (log2 ratio) -1
0
1 at 1597.785 kb on + strand, within Shew_1387 at 1598.107 kb on - strand at 1598.169 kb on + strand, within Shew_1388 at 1598.902 kb on - strand, within Shew_1389 at 1598.985 kb on - strand, within Shew_1389 at 1599.078 kb on - strand, within Shew_1389 at 1599.472 kb on + strand at 1599.527 kb on + strand at 1600.112 kb on - strand, within Shew_1390 at 1600.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 1,597,785 + Shew_1387 0.73 -1.1 1,598,107 - +0.7 1,598,169 + Shew_1388 0.14 +0.7 1,598,902 - Shew_1389 0.19 +1.1 1,598,985 - Shew_1389 0.30 -0.6 1,599,078 - Shew_1389 0.41 +0.7 1,599,472 + +0.7 1,599,527 + +1.2 1,600,112 - Shew_1390 0.59 -0.8 1,600,495 + +0.4
Or see this region's nucleotide sequence