Strain Fitness in Shewanella loihica PV-4 around Shew_1354

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
1,561,446	+	flgJ	Shew_1353	0.11	-0.6
1,561,928	+	flgJ	Shew_1353	0.58	-0.7
1,562,229	-	flgJ	Shew_1353	0.87	-1.1
1,562,337	+				-0.8
1,563,151	+		Shew_1354	0.38	+0.2
1,563,924	+		Shew_1354	0.78	-1.8
1,564,083	-		Shew_1354	0.86	-0.4
1,564,458	+				-1.1
1,564,466	-				+0.1
1,564,466	-				-1.2
1,564,466	-				-0.6
1,564,582	-	flgL	Shew_1355	0.19	-1.2
1,565,168	+	flgL	Shew_1355	0.68	-0.8
1,565,273	-	flgL	Shew_1355	0.77	-0.2
1,565,327	-	flgL	Shew_1355	0.82	-0.4