Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0765 and Shew_0766 overlap by 1 nucleotides Shew_0766 and Shew_0767 are separated by 229 nucleotides
Shew_0765: Shew_0765 - acriflavin resistance protein (RefSeq), at 870,547 to 873,696
_0765
Shew_0766: Shew_0766 - RND family efflux transporter MFP subunit (RefSeq), at 873,696 to 874,919
_0766
Shew_0767: Shew_0767 - ATP-dependent RNA helicase SrmB (RefSeq), at 875,149 to 876,408
_0767
Position (kb) 873
874
875 Strain fitness (log2 ratio) -1
0
1
2
3 at 872.786 kb on + strand, within Shew_0765 at 872.801 kb on + strand, within Shew_0765 at 872.804 kb on - strand, within Shew_0765 at 872.984 kb on + strand, within Shew_0765 at 873.102 kb on - strand, within Shew_0765 at 873.107 kb on - strand, within Shew_0765 at 873.351 kb on + strand, within Shew_0765 at 873.558 kb on - strand at 873.583 kb on + strand at 873.593 kb on + strand at 873.601 kb on - strand at 873.601 kb on - strand at 873.675 kb on + strand at 873.757 kb on + strand at 873.765 kb on - strand at 873.856 kb on + strand, within Shew_0766 at 873.864 kb on - strand, within Shew_0766 at 873.864 kb on - strand, within Shew_0766 at 873.985 kb on + strand, within Shew_0766 at 874.040 kb on + strand, within Shew_0766 at 874.070 kb on + strand, within Shew_0766 at 874.130 kb on + strand, within Shew_0766 at 874.210 kb on + strand, within Shew_0766 at 874.226 kb on + strand, within Shew_0766 at 874.269 kb on + strand, within Shew_0766 at 874.296 kb on - strand, within Shew_0766 at 874.400 kb on - strand, within Shew_0766 at 875.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 872,786 + Shew_0765 0.71 -0.3 872,801 + Shew_0765 0.72 +0.4 872,804 - Shew_0765 0.72 +0.1 872,984 + Shew_0765 0.77 +0.6 873,102 - Shew_0765 0.81 +0.0 873,107 - Shew_0765 0.81 +0.0 873,351 + Shew_0765 0.89 +0.4 873,558 - +0.5 873,583 + +0.0 873,593 + -0.7 873,601 - -0.2 873,601 - -0.5 873,675 + +0.3 873,757 + +0.1 873,765 - -1.7 873,856 + Shew_0766 0.13 -0.1 873,864 - Shew_0766 0.14 +1.3 873,864 - Shew_0766 0.14 -0.1 873,985 + Shew_0766 0.24 +0.0 874,040 + Shew_0766 0.28 +0.8 874,070 + Shew_0766 0.31 -0.0 874,130 + Shew_0766 0.35 +1.0 874,210 + Shew_0766 0.42 +3.2 874,226 + Shew_0766 0.43 +0.3 874,269 + Shew_0766 0.47 +0.1 874,296 - Shew_0766 0.49 +0.0 874,400 - Shew_0766 0.58 -0.2 875,200 - +0.1
Or see this region's nucleotide sequence