Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0763 and Shew_0764 are separated by 186 nucleotides Shew_0764 and Shew_0765 are separated by 138 nucleotides Shew_0765 and Shew_0766 overlap by 1 nucleotides
Shew_0763: Shew_0763 - putative PAS/PAC sensor protein (RefSeq), at 867,403 to 869,619
_0763
Shew_0764: Shew_0764 - radical SAM domain-containing protein (RefSeq), at 869,806 to 870,408
_0764
Shew_0765: Shew_0765 - acriflavin resistance protein (RefSeq), at 870,547 to 873,696
_0765
Shew_0766: Shew_0766 - RND family efflux transporter MFP subunit (RefSeq), at 873,696 to 874,919
_0766
Position (kb) 870
871
872
873
874 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 870.182 kb on - strand, within Shew_0764 at 870.222 kb on + strand, within Shew_0764 at 870.335 kb on - strand, within Shew_0764 at 870.396 kb on - strand at 870.402 kb on + strand at 870.545 kb on + strand at 870.665 kb on - strand at 870.665 kb on - strand at 870.944 kb on + strand, within Shew_0765 at 871.092 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.313 kb on - strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.385 kb on + strand, within Shew_0765 at 871.567 kb on + strand, within Shew_0765 at 871.667 kb on - strand, within Shew_0765 at 871.816 kb on + strand, within Shew_0765 at 871.943 kb on - strand, within Shew_0765 at 872.031 kb on - strand, within Shew_0765 at 872.179 kb on - strand, within Shew_0765 at 872.190 kb on + strand, within Shew_0765 at 872.196 kb on + strand, within Shew_0765 at 872.258 kb on - strand, within Shew_0765 at 872.340 kb on + strand, within Shew_0765 at 872.786 kb on + strand, within Shew_0765 at 872.801 kb on + strand, within Shew_0765 at 872.804 kb on - strand, within Shew_0765 at 872.984 kb on + strand, within Shew_0765 at 873.102 kb on - strand, within Shew_0765 at 873.107 kb on - strand, within Shew_0765 at 873.351 kb on + strand, within Shew_0765 at 873.558 kb on - strand at 873.583 kb on + strand at 873.593 kb on + strand at 873.601 kb on - strand at 873.601 kb on - strand at 873.675 kb on + strand at 873.757 kb on + strand at 873.765 kb on - strand at 873.856 kb on + strand, within Shew_0766 at 873.864 kb on - strand, within Shew_0766 at 873.864 kb on - strand, within Shew_0766 at 873.985 kb on + strand, within Shew_0766 at 874.040 kb on + strand, within Shew_0766 at 874.070 kb on + strand, within Shew_0766 at 874.130 kb on + strand, within Shew_0766 at 874.210 kb on + strand, within Shew_0766 at 874.226 kb on + strand, within Shew_0766 at 874.269 kb on + strand, within Shew_0766 at 874.296 kb on - strand, within Shew_0766 at 874.400 kb on - strand, within Shew_0766
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 870,182 - Shew_0764 0.62 -0.2 870,222 + Shew_0764 0.69 -0.3 870,335 - Shew_0764 0.88 -2.6 870,396 - -0.1 870,402 + -0.8 870,545 + +0.1 870,665 - +0.6 870,665 - -0.2 870,944 + Shew_0765 0.13 +0.3 871,092 + Shew_0765 0.17 -0.7 871,305 + Shew_0765 0.24 +0.1 871,305 + Shew_0765 0.24 +0.6 871,305 + Shew_0765 0.24 -0.4 871,313 - Shew_0765 0.24 -0.5 871,342 + Shew_0765 0.25 -0.3 871,342 + Shew_0765 0.25 +0.1 871,342 + Shew_0765 0.25 +0.1 871,385 + Shew_0765 0.27 +0.1 871,567 + Shew_0765 0.32 +0.8 871,667 - Shew_0765 0.36 -1.0 871,816 + Shew_0765 0.40 +0.9 871,943 - Shew_0765 0.44 +0.1 872,031 - Shew_0765 0.47 -0.0 872,179 - Shew_0765 0.52 -0.2 872,190 + Shew_0765 0.52 -0.1 872,196 + Shew_0765 0.52 +0.3 872,258 - Shew_0765 0.54 -0.3 872,340 + Shew_0765 0.57 +1.1 872,786 + Shew_0765 0.71 -0.3 872,801 + Shew_0765 0.72 +0.4 872,804 - Shew_0765 0.72 +0.1 872,984 + Shew_0765 0.77 +0.6 873,102 - Shew_0765 0.81 +0.0 873,107 - Shew_0765 0.81 +0.0 873,351 + Shew_0765 0.89 +0.4 873,558 - +0.5 873,583 + +0.0 873,593 + -0.7 873,601 - -0.2 873,601 - -0.5 873,675 + +0.3 873,757 + +0.1 873,765 - -1.7 873,856 + Shew_0766 0.13 -0.1 873,864 - Shew_0766 0.14 +1.3 873,864 - Shew_0766 0.14 -0.1 873,985 + Shew_0766 0.24 +0.0 874,040 + Shew_0766 0.28 +0.8 874,070 + Shew_0766 0.31 -0.0 874,130 + Shew_0766 0.35 +1.0 874,210 + Shew_0766 0.42 +3.2 874,226 + Shew_0766 0.43 +0.3 874,269 + Shew_0766 0.47 +0.1 874,296 - Shew_0766 0.49 +0.0 874,400 - Shew_0766 0.58 -0.2
Or see this region's nucleotide sequence