Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0700 and Shew_0701 are separated by 357 nucleotides Shew_0701 and Shew_0702 are separated by 14 nucleotides Shew_0702 and Shew_0703 are separated by 183 nucleotides Shew_0703 and Shew_0704 are separated by 186 nucleotides
Shew_0700: Shew_0700 - pirin domain-containing protein (RefSeq), at 794,970 to 795,830
_0700
Shew_0701: Shew_0701 - hypothetical protein (RefSeq), at 796,188 to 796,769
_0701
Shew_0702: Shew_0702 - rhomboid family protein (RefSeq), at 796,784 to 797,866
_0702
Shew_0703: Shew_0703 - response regulator receiver protein (RefSeq), at 798,050 to 798,412
_0703
Shew_0704: Shew_0704 - hypothetical protein (RefSeq), at 798,599 to 799,195
_0704
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1 at 795.856 kb on + strand at 796.011 kb on + strand at 796.220 kb on + strand at 796.404 kb on - strand, within Shew_0701 at 796.406 kb on + strand, within Shew_0701 at 796.503 kb on - strand, within Shew_0701 at 796.505 kb on + strand, within Shew_0701 at 796.553 kb on - strand, within Shew_0701 at 796.661 kb on + strand, within Shew_0701 at 796.667 kb on + strand, within Shew_0701 at 796.668 kb on + strand, within Shew_0701 at 796.698 kb on - strand, within Shew_0701 at 796.728 kb on - strand at 796.897 kb on + strand, within Shew_0702 at 796.912 kb on + strand, within Shew_0702 at 796.920 kb on - strand, within Shew_0702 at 796.920 kb on - strand, within Shew_0702 at 797.179 kb on + strand, within Shew_0702 at 797.297 kb on - strand, within Shew_0702 at 797.463 kb on - strand, within Shew_0702 at 797.473 kb on - strand, within Shew_0702 at 797.677 kb on - strand, within Shew_0702 at 797.849 kb on - strand at 797.955 kb on + strand at 797.963 kb on - strand at 797.963 kb on - strand at 798.134 kb on - strand, within Shew_0703 at 798.162 kb on + strand, within Shew_0703 at 798.251 kb on + strand, within Shew_0703 at 798.373 kb on + strand, within Shew_0703 at 798.435 kb on + strand at 798.503 kb on + strand at 798.526 kb on + strand at 798.677 kb on + strand, within Shew_0704 at 798.701 kb on - strand, within Shew_0704 at 798.861 kb on - strand, within Shew_0704
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 795,856 + +0.0 796,011 + +0.0 796,220 + +0.2 796,404 - Shew_0701 0.37 -0.5 796,406 + Shew_0701 0.37 +0.3 796,503 - Shew_0701 0.54 -1.0 796,505 + Shew_0701 0.54 +0.4 796,553 - Shew_0701 0.63 -0.4 796,661 + Shew_0701 0.81 -0.6 796,667 + Shew_0701 0.82 +0.4 796,668 + Shew_0701 0.82 +0.1 796,698 - Shew_0701 0.88 -0.3 796,728 - -0.4 796,897 + Shew_0702 0.10 -0.3 796,912 + Shew_0702 0.12 -0.3 796,920 - Shew_0702 0.13 -0.7 796,920 - Shew_0702 0.13 -0.1 797,179 + Shew_0702 0.36 -2.0 797,297 - Shew_0702 0.47 -0.6 797,463 - Shew_0702 0.63 -0.1 797,473 - Shew_0702 0.64 -1.6 797,677 - Shew_0702 0.82 +0.9 797,849 - -0.2 797,955 + +0.6 797,963 - +0.4 797,963 - -0.1 798,134 - Shew_0703 0.23 +0.4 798,162 + Shew_0703 0.31 +0.3 798,251 + Shew_0703 0.55 +0.0 798,373 + Shew_0703 0.89 +0.3 798,435 + +0.5 798,503 + +0.1 798,526 + -0.4 798,677 + Shew_0704 0.13 -0.3 798,701 - Shew_0704 0.17 +0.6 798,861 - Shew_0704 0.44 -0.4
Or see this region's nucleotide sequence