Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0650 and Shew_0651 are separated by 74 nucleotides Shew_0651 and Shew_0652 are separated by 102 nucleotides Shew_0652 and Shew_0653 are separated by 123 nucleotides
Shew_0650: Shew_0650 - hypothetical protein (RefSeq), at 737,841 to 739,199
_0650
Shew_0651: Shew_0651 - hypothetical protein (RefSeq), at 739,274 to 739,582
_0651
Shew_0652: Shew_0652 - hypothetical protein (RefSeq), at 739,685 to 739,960
_0652
Shew_0653: Shew_0653 - LuxR family transcriptional regulator (RefSeq), at 740,084 to 740,704
_0653
Position (kb) 739
740 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 738.787 kb on - strand, within Shew_0650 at 738.796 kb on - strand, within Shew_0650 at 739.077 kb on + strand at 739.099 kb on + strand at 739.144 kb on + strand at 739.154 kb on + strand at 739.301 kb on + strand at 739.550 kb on + strand, within Shew_0651 at 739.560 kb on + strand at 739.648 kb on - strand at 739.808 kb on + strand, within Shew_0652 at 739.871 kb on + strand, within Shew_0652 at 739.871 kb on + strand, within Shew_0652 at 739.871 kb on + strand, within Shew_0652 at 739.871 kb on + strand, within Shew_0652 at 739.879 kb on - strand, within Shew_0652 at 739.926 kb on + strand, within Shew_0652 at 739.926 kb on + strand, within Shew_0652 at 739.933 kb on - strand at 739.934 kb on - strand at 740.002 kb on - strand at 740.006 kb on + strand at 740.006 kb on + strand at 740.007 kb on + strand at 740.012 kb on + strand at 740.014 kb on - strand at 740.014 kb on - strand at 740.045 kb on - strand at 740.100 kb on - strand at 740.100 kb on - strand at 740.108 kb on + strand at 740.108 kb on + strand at 740.108 kb on + strand at 740.113 kb on + strand at 740.113 kb on + strand at 740.121 kb on - strand at 740.121 kb on - strand at 740.210 kb on + strand, within Shew_0653 at 740.210 kb on + strand, within Shew_0653 at 740.210 kb on + strand, within Shew_0653 at 740.210 kb on + strand, within Shew_0653 at 740.210 kb on + strand, within Shew_0653 at 740.210 kb on + strand, within Shew_0653 at 740.210 kb on + strand, within Shew_0653 at 740.210 kb on + strand, within Shew_0653 at 740.210 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.215 kb on + strand, within Shew_0653 at 740.218 kb on - strand, within Shew_0653 at 740.218 kb on - strand, within Shew_0653 at 740.218 kb on - strand, within Shew_0653 at 740.223 kb on - strand, within Shew_0653 at 740.223 kb on - strand, within Shew_0653 at 740.223 kb on - strand, within Shew_0653 at 740.223 kb on - strand, within Shew_0653 at 740.224 kb on + strand, within Shew_0653 at 740.225 kb on - strand, within Shew_0653 at 740.239 kb on + strand, within Shew_0653 at 740.247 kb on - strand, within Shew_0653 at 740.248 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.262 kb on + strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on + strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.270 kb on - strand, within Shew_0653 at 740.272 kb on + strand, within Shew_0653 at 740.276 kb on + strand, within Shew_0653 at 740.280 kb on - strand, within Shew_0653 at 740.280 kb on - strand, within Shew_0653 at 740.281 kb on + strand, within Shew_0653 at 740.282 kb on + strand, within Shew_0653 at 740.288 kb on + strand, within Shew_0653 at 740.289 kb on - strand, within Shew_0653 at 740.289 kb on - strand, within Shew_0653 at 740.289 kb on - strand, within Shew_0653 at 740.289 kb on - strand, within Shew_0653 at 740.290 kb on - strand, within Shew_0653 at 740.392 kb on + strand, within Shew_0653 at 740.400 kb on - strand, within Shew_0653 at 740.465 kb on - strand, within Shew_0653 at 740.508 kb on + strand, within Shew_0653 at 740.531 kb on - strand, within Shew_0653 at 740.546 kb on - strand, within Shew_0653 at 740.572 kb on + strand, within Shew_0653 at 740.572 kb on + strand, within Shew_0653 at 740.577 kb on + strand, within Shew_0653 at 740.577 kb on + strand, within Shew_0653 at 740.577 kb on + strand, within Shew_0653 at 740.577 kb on + strand, within Shew_0653 at 740.577 kb on + strand, within Shew_0653 at 740.577 kb on + strand, within Shew_0653 at 740.578 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.582 kb on + strand, within Shew_0653 at 740.585 kb on - strand, within Shew_0653 at 740.585 kb on - strand, within Shew_0653 at 740.585 kb on - strand, within Shew_0653 at 740.585 kb on - strand, within Shew_0653 at 740.585 kb on - strand, within Shew_0653 at 740.585 kb on - strand, within Shew_0653 at 740.585 kb on - strand, within Shew_0653 at 740.586 kb on - strand, within Shew_0653 at 740.586 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.590 kb on - strand, within Shew_0653 at 740.596 kb on - strand, within Shew_0653 at 740.597 kb on - strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.599 kb on + strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.607 kb on - strand, within Shew_0653 at 740.617 kb on - strand, within Shew_0653 at 740.625 kb on - strand, within Shew_0653 at 740.625 kb on - strand, within Shew_0653 at 740.625 kb on - strand, within Shew_0653 at 740.625 kb on - strand, within Shew_0653 at 740.625 kb on - strand, within Shew_0653 at 740.625 kb on - strand, within Shew_0653 at 740.637 kb on + strand, within Shew_0653 at 740.683 kb on - strand at 740.694 kb on + strand at 740.694 kb on + strand at 740.859 kb on + strand at 740.860 kb on + strand at 740.867 kb on - strand at 740.867 kb on + strand at 740.867 kb on + strand at 740.867 kb on + strand at 740.867 kb on + strand at 740.868 kb on - strand at 740.874 kb on + strand at 740.874 kb on - strand at 740.875 kb on - strand at 740.875 kb on - strand at 740.875 kb on - strand at 740.885 kb on + strand at 740.885 kb on + strand at 740.885 kb on + strand at 740.885 kb on + strand at 740.885 kb on + strand at 740.885 kb on + strand at 740.887 kb on + strand at 740.888 kb on - strand at 740.893 kb on - strand at 740.893 kb on - strand at 740.893 kb on - strand at 740.893 kb on - strand at 740.894 kb on - strand at 740.895 kb on + strand at 740.903 kb on - strand at 740.903 kb on - strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.913 kb on + strand at 740.921 kb on - strand at 740.921 kb on - strand at 740.921 kb on - strand at 740.921 kb on - strand at 740.921 kb on - strand at 740.921 kb on - strand at 740.921 kb on - strand at 740.921 kb on - strand at 740.921 kb on - strand at 740.932 kb on + strand at 740.950 kb on - strand at 740.950 kb on - strand at 740.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 738,787 - Shew_0650 0.70 +0.5 738,796 - Shew_0650 0.70 +0.8 739,077 + +0.1 739,099 + +0.3 739,144 + -0.1 739,154 + -0.2 739,301 + +0.8 739,550 + Shew_0651 0.89 -0.3 739,560 + -0.1 739,648 - +0.6 739,808 + Shew_0652 0.45 -0.1 739,871 + Shew_0652 0.67 -0.8 739,871 + Shew_0652 0.67 -0.5 739,871 + Shew_0652 0.67 +0.7 739,871 + Shew_0652 0.67 -1.9 739,879 - Shew_0652 0.70 -0.8 739,926 + Shew_0652 0.87 -1.3 739,926 + Shew_0652 0.87 +0.2 739,933 - +0.2 739,934 - -1.1 740,002 - +0.3 740,006 + +0.0 740,006 + -0.4 740,007 + -0.2 740,012 + -1.2 740,014 - -0.1 740,014 - +0.9 740,045 - +0.9 740,100 - +0.5 740,100 - +0.1 740,108 + -0.7 740,108 + -0.5 740,108 + +0.4 740,113 + +0.2 740,113 + -0.0 740,121 - +0.3 740,121 - -0.3 740,210 + Shew_0653 0.20 +1.1 740,210 + Shew_0653 0.20 -0.6 740,210 + Shew_0653 0.20 -0.7 740,210 + Shew_0653 0.20 +0.6 740,210 + Shew_0653 0.20 +0.2 740,210 + Shew_0653 0.20 +1.8 740,210 + Shew_0653 0.20 -0.2 740,210 + Shew_0653 0.20 +0.1 740,210 + Shew_0653 0.20 -0.3 740,215 + Shew_0653 0.21 -0.1 740,215 + Shew_0653 0.21 -0.2 740,215 + Shew_0653 0.21 -0.6 740,215 + Shew_0653 0.21 +0.3 740,215 + Shew_0653 0.21 -0.2 740,215 + Shew_0653 0.21 +0.6 740,215 + Shew_0653 0.21 -0.9 740,215 + Shew_0653 0.21 -0.1 740,215 + Shew_0653 0.21 -0.0 740,215 + Shew_0653 0.21 -0.0 740,218 - Shew_0653 0.22 +0.5 740,218 - Shew_0653 0.22 +0.8 740,218 - Shew_0653 0.22 -0.0 740,223 - Shew_0653 0.22 +0.0 740,223 - Shew_0653 0.22 +0.2 740,223 - Shew_0653 0.22 +0.3 740,223 - Shew_0653 0.22 +0.2 740,224 + Shew_0653 0.23 +0.9 740,225 - Shew_0653 0.23 +0.4 740,239 + Shew_0653 0.25 +0.1 740,247 - Shew_0653 0.26 -0.7 740,248 + Shew_0653 0.26 -0.0 740,262 + Shew_0653 0.29 +0.6 740,262 + Shew_0653 0.29 -0.1 740,262 + Shew_0653 0.29 -0.0 740,262 + Shew_0653 0.29 -0.0 740,262 + Shew_0653 0.29 -0.8 740,262 + Shew_0653 0.29 -0.1 740,262 + Shew_0653 0.29 -1.3 740,262 + Shew_0653 0.29 -0.5 740,262 + Shew_0653 0.29 +0.3 740,262 + Shew_0653 0.29 +0.8 740,262 + Shew_0653 0.29 -0.6 740,262 + Shew_0653 0.29 -0.5 740,262 + Shew_0653 0.29 +0.5 740,262 + Shew_0653 0.29 +1.2 740,262 + Shew_0653 0.29 -0.2 740,262 + Shew_0653 0.29 +0.6 740,270 - Shew_0653 0.30 +1.0 740,270 - Shew_0653 0.30 -0.4 740,270 - Shew_0653 0.30 +0.4 740,270 - Shew_0653 0.30 -0.1 740,270 + Shew_0653 0.30 -0.2 740,270 - Shew_0653 0.30 +0.1 740,270 - Shew_0653 0.30 -0.1 740,270 - Shew_0653 0.30 -0.1 740,270 - Shew_0653 0.30 +0.4 740,270 - Shew_0653 0.30 +0.0 740,270 - Shew_0653 0.30 -0.2 740,270 - Shew_0653 0.30 -0.4 740,272 + Shew_0653 0.30 -0.1 740,276 + Shew_0653 0.31 -0.5 740,280 - Shew_0653 0.32 -0.4 740,280 - Shew_0653 0.32 -0.1 740,281 + Shew_0653 0.32 +3.2 740,282 + Shew_0653 0.32 +0.4 740,288 + Shew_0653 0.33 -1.3 740,289 - Shew_0653 0.33 -0.4 740,289 - Shew_0653 0.33 +0.0 740,289 - Shew_0653 0.33 -0.9 740,289 - Shew_0653 0.33 +0.9 740,290 - Shew_0653 0.33 -0.4 740,392 + Shew_0653 0.50 +1.4 740,400 - Shew_0653 0.51 -0.3 740,465 - Shew_0653 0.61 -0.3 740,508 + Shew_0653 0.68 +1.9 740,531 - Shew_0653 0.72 +0.0 740,546 - Shew_0653 0.74 -0.3 740,572 + Shew_0653 0.79 +0.5 740,572 + Shew_0653 0.79 +0.0 740,577 + Shew_0653 0.79 -1.2 740,577 + Shew_0653 0.79 -0.4 740,577 + Shew_0653 0.79 +0.0 740,577 + Shew_0653 0.79 +1.1 740,577 + Shew_0653 0.79 +0.1 740,577 + Shew_0653 0.79 +0.0 740,578 + Shew_0653 0.80 -0.1 740,582 + Shew_0653 0.80 +0.3 740,582 + Shew_0653 0.80 -0.0 740,582 + Shew_0653 0.80 +0.9 740,582 + Shew_0653 0.80 -0.1 740,582 + Shew_0653 0.80 +0.1 740,582 + Shew_0653 0.80 -1.0 740,582 + Shew_0653 0.80 +0.7 740,582 + Shew_0653 0.80 -1.2 740,582 + Shew_0653 0.80 -0.2 740,582 + Shew_0653 0.80 -0.1 740,582 + Shew_0653 0.80 +0.6 740,582 + Shew_0653 0.80 -0.0 740,582 + Shew_0653 0.80 -0.5 740,582 + Shew_0653 0.80 +0.6 740,582 + Shew_0653 0.80 -0.8 740,582 + Shew_0653 0.80 -0.6 740,582 + Shew_0653 0.80 +0.3 740,582 + Shew_0653 0.80 +0.4 740,582 + Shew_0653 0.80 +0.4 740,582 + Shew_0653 0.80 +0.0 740,582 + Shew_0653 0.80 -0.3 740,585 - Shew_0653 0.81 +0.0 740,585 - Shew_0653 0.81 -0.2 740,585 - Shew_0653 0.81 -0.1 740,585 - Shew_0653 0.81 +0.9 740,585 - Shew_0653 0.81 -1.4 740,585 - Shew_0653 0.81 +0.7 740,585 - Shew_0653 0.81 -2.5 740,586 - Shew_0653 0.81 -0.2 740,586 - Shew_0653 0.81 +1.2 740,590 - Shew_0653 0.81 -0.1 740,590 - Shew_0653 0.81 +0.9 740,590 - Shew_0653 0.81 +0.3 740,590 - Shew_0653 0.81 -0.2 740,590 - Shew_0653 0.81 -0.2 740,590 - Shew_0653 0.81 -0.8 740,590 - Shew_0653 0.81 +0.0 740,590 - Shew_0653 0.81 +0.0 740,590 - Shew_0653 0.81 -0.8 740,590 - Shew_0653 0.81 -0.7 740,590 - Shew_0653 0.81 +0.1 740,590 - Shew_0653 0.81 -0.2 740,590 - Shew_0653 0.81 -0.3 740,590 - Shew_0653 0.81 -0.4 740,590 - Shew_0653 0.81 +0.3 740,590 - Shew_0653 0.81 +0.6 740,590 - Shew_0653 0.81 +1.2 740,590 - Shew_0653 0.81 -0.4 740,590 - Shew_0653 0.81 +0.2 740,590 - Shew_0653 0.81 +0.3 740,596 - Shew_0653 0.82 -0.7 740,597 - Shew_0653 0.83 -0.3 740,599 + Shew_0653 0.83 +0.2 740,599 + Shew_0653 0.83 +1.0 740,599 + Shew_0653 0.83 -1.2 740,599 + Shew_0653 0.83 -0.5 740,599 + Shew_0653 0.83 +0.0 740,599 + Shew_0653 0.83 -2.4 740,599 + Shew_0653 0.83 -0.0 740,599 + Shew_0653 0.83 -0.2 740,599 + Shew_0653 0.83 -0.0 740,599 + Shew_0653 0.83 -0.5 740,599 + Shew_0653 0.83 -0.1 740,607 - Shew_0653 0.84 -0.0 740,607 - Shew_0653 0.84 -0.1 740,607 - Shew_0653 0.84 +0.2 740,607 - Shew_0653 0.84 -0.2 740,607 - Shew_0653 0.84 +0.6 740,607 - Shew_0653 0.84 -0.5 740,607 - Shew_0653 0.84 -0.6 740,607 - Shew_0653 0.84 -1.0 740,607 - Shew_0653 0.84 -0.2 740,607 - Shew_0653 0.84 -1.6 740,607 - Shew_0653 0.84 +0.3 740,607 - Shew_0653 0.84 +1.6 740,607 - Shew_0653 0.84 +0.4 740,607 - Shew_0653 0.84 -1.3 740,607 - Shew_0653 0.84 -0.3 740,617 - Shew_0653 0.86 +0.2 740,625 - Shew_0653 0.87 +1.1 740,625 - Shew_0653 0.87 -0.9 740,625 - Shew_0653 0.87 +0.8 740,625 - Shew_0653 0.87 +0.9 740,625 - Shew_0653 0.87 +0.4 740,625 - Shew_0653 0.87 -0.2 740,637 + Shew_0653 0.89 -0.4 740,683 - -0.4 740,694 + +0.1 740,694 + -0.2 740,859 + -0.2 740,860 + +0.5 740,867 - +1.0 740,867 + +0.6 740,867 + -0.4 740,867 + +1.3 740,867 + +1.2 740,868 - +0.9 740,874 + -0.3 740,874 - -1.3 740,875 - +0.3 740,875 - +1.8 740,875 - +0.2 740,885 + -2.1 740,885 + -0.9 740,885 + +0.4 740,885 + +0.6 740,885 + -0.0 740,885 + -0.6 740,887 + +0.1 740,888 - +0.9 740,893 - -0.2 740,893 - -1.1 740,893 - +2.4 740,893 - +0.1 740,894 - +0.9 740,895 + +0.2 740,903 - -0.7 740,903 - +0.7 740,913 + -0.6 740,913 + +0.3 740,913 + +0.0 740,913 + -0.0 740,913 + +0.1 740,913 + +0.0 740,913 + -0.2 740,913 + +0.5 740,913 + +0.1 740,913 + -1.0 740,913 + -0.4 740,913 + +0.1 740,921 - +1.4 740,921 - -0.2 740,921 - +0.5 740,921 - -0.1 740,921 - -0.5 740,921 - -0.5 740,921 - +0.2 740,921 - +0.1 740,921 - -0.5 740,932 + +0.5 740,950 - +0.4 740,950 - +0.4 740,950 - -0.2
Or see this region's nucleotide sequence