Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0393 and Shew_0394 are separated by 32 nucleotides Shew_0394 and Shew_0395 are separated by 73 nucleotides Shew_0395 and Shew_0396 are separated by 89 nucleotides Shew_0396 and Shew_0397 are separated by 14 nucleotides
Shew_0393: Shew_0393 - type II secretion system protein (RefSeq), at 444,217 to 445,434
_0393
Shew_0394: Shew_0394 - hypothetical protein (RefSeq), at 445,467 to 445,958
_0394
Shew_0395: Shew_0395 - methylation site containing protein (RefSeq), at 446,032 to 446,667
_0395
Shew_0396: Shew_0396 - methylation site containing protein (RefSeq), at 446,757 to 447,266
_0396
Shew_0397: Shew_0397 - methylation site containing protein (RefSeq), at 447,281 to 447,772
_0397
Position (kb) 446
447 Strain fitness (log2 ratio) -1
0
1 at 445.058 kb on + strand, within Shew_0393 at 445.066 kb on - strand, within Shew_0393 at 445.165 kb on - strand, within Shew_0393 at 445.221 kb on - strand, within Shew_0393 at 445.383 kb on + strand at 445.456 kb on + strand at 445.739 kb on + strand, within Shew_0394 at 445.976 kb on - strand at 446.335 kb on + strand, within Shew_0395 at 446.641 kb on + strand at 446.781 kb on - strand at 447.023 kb on - strand, within Shew_0396 at 447.033 kb on - strand, within Shew_0396 at 447.144 kb on - strand, within Shew_0396 at 447.229 kb on + strand at 447.548 kb on + strand, within Shew_0397
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 445,058 + Shew_0393 0.69 -0.7 445,066 - Shew_0393 0.70 +0.1 445,165 - Shew_0393 0.78 +0.2 445,221 - Shew_0393 0.82 -0.1 445,383 + -0.3 445,456 + +0.7 445,739 + Shew_0394 0.55 -0.8 445,976 - +1.1 446,335 + Shew_0395 0.48 +1.0 446,641 + +0.5 446,781 - +1.5 447,023 - Shew_0396 0.52 +0.6 447,033 - Shew_0396 0.54 +0.3 447,144 - Shew_0396 0.76 -1.6 447,229 + -1.1 447,548 + Shew_0397 0.54 +0.2
Or see this region's nucleotide sequence