Strain Fitness in Shewanella loihica PV-4 around Shew_0044

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
50,876	-		Shew_0042	0.23	-0.2
50,945	-		Shew_0042	0.36	+0.3
51,176	+		Shew_0042	0.80	-0.1
51,214	+		Shew_0042	0.87	+0.6
51,214	+		Shew_0042	0.87	+0.0
51,222	-		Shew_0042	0.89	-1.3
51,321	-				+0.4
51,326	-				-0.4
51,336	-				+0.1
51,399	-				+0.1
51,417	+				-0.3
51,519	-		Shew_0043	0.59	-0.1
51,522	+		Shew_0043	0.60	+0.2
51,789	-				+0.0
52,086	-				-0.4
52,086	-				-0.0
52,090	+				+0.3
52,090	+				+0.2
52,312	+		Shew_0044	0.16	+0.4
52,537	-		Shew_0044	0.23	-0.2
52,826	-		Shew_0044	0.33	-0.7
52,893	+		Shew_0044	0.35	+0.7
52,901	-		Shew_0044	0.35	+0.1
52,960	+		Shew_0044	0.37	-0.4
52,968	-		Shew_0044	0.37	-0.5
53,047	-		Shew_0044	0.40	-0.8
53,108	+		Shew_0044	0.42	-0.2
53,116	-		Shew_0044	0.42	+0.4
53,208	+		Shew_0044	0.45	-0.2
53,298	+		Shew_0044	0.48	-0.4
53,395	-		Shew_0044	0.51	-2.4
53,516	+		Shew_0044	0.55	-0.3
53,724	+		Shew_0044	0.62	-0.6
54,009	-		Shew_0044	0.71	-0.4
54,009	-		Shew_0044	0.71	-0.6
54,105	+		Shew_0044	0.74	-0.3
54,113	-		Shew_0044	0.74	-0.5
54,689	-				+0.3
54,689	-				+0.4
54,689	-				-0.2
55,077	+		Shew_0045	0.15	+0.3
55,085	-		Shew_0045	0.16	-0.0
55,356	-		Shew_0045	0.41	+0.0
55,560	+		Shew_0045	0.60	-0.2
55,648	-		Shew_0045	0.68	-0.2
55,746	+		Shew_0045	0.77	-0.2
55,749	+		Shew_0045	0.78	-0.1
55,749	+		Shew_0045	0.78	+0.9
55,749	+		Shew_0045	0.78	-0.0
55,757	-		Shew_0045	0.78	+0.2
55,798	+		Shew_0045	0.82	-0.6
55,891	-				-1.2