Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0031 and Shew_0032 are separated by 9 nucleotides Shew_0032 and Shew_0033 are separated by 222 nucleotides
Shew_0031: Shew_0031 - RND family efflux transporter MFP subunit (RefSeq), at 33,256 to 34,416
_0031
Shew_0032: Shew_0032 - hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq), at 34,426 to 37,575
_0032
Shew_0033: Shew_0033 - peptidase M14, carboxypeptidase A (RefSeq), at 37,798 to 39,639
_0033
Position (kb) 34
35
36
37
38 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 33.426 kb on + strand, within Shew_0031 at 33.432 kb on + strand, within Shew_0031 at 33.526 kb on - strand, within Shew_0031 at 33.559 kb on + strand, within Shew_0031 at 33.588 kb on - strand, within Shew_0031 at 33.618 kb on + strand, within Shew_0031 at 33.626 kb on - strand, within Shew_0031 at 33.626 kb on - strand, within Shew_0031 at 33.849 kb on - strand, within Shew_0031 at 33.943 kb on - strand, within Shew_0031 at 34.358 kb on + strand at 34.366 kb on - strand at 34.565 kb on - strand at 34.585 kb on + strand at 34.802 kb on + strand, within Shew_0032 at 34.802 kb on + strand, within Shew_0032 at 34.810 kb on - strand, within Shew_0032 at 34.840 kb on + strand, within Shew_0032 at 34.985 kb on + strand, within Shew_0032 at 34.985 kb on + strand, within Shew_0032 at 34.985 kb on + strand, within Shew_0032 at 34.993 kb on - strand, within Shew_0032 at 35.223 kb on - strand, within Shew_0032 at 35.313 kb on + strand, within Shew_0032 at 35.384 kb on + strand, within Shew_0032 at 35.395 kb on + strand, within Shew_0032 at 35.561 kb on - strand, within Shew_0032 at 35.762 kb on + strand, within Shew_0032 at 35.877 kb on - strand, within Shew_0032 at 36.056 kb on + strand, within Shew_0032 at 36.262 kb on + strand, within Shew_0032 at 36.548 kb on + strand, within Shew_0032 at 37.182 kb on + strand, within Shew_0032 at 37.182 kb on + strand, within Shew_0032 at 37.207 kb on + strand, within Shew_0032 at 37.296 kb on + strand at 37.960 kb on + strand at 37.968 kb on - strand at 38.118 kb on - strand, within Shew_0033 at 38.295 kb on + strand, within Shew_0033 at 38.564 kb on + strand, within Shew_0033
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 33,426 + Shew_0031 0.15 -4.2 33,432 + Shew_0031 0.15 -3.6 33,526 - Shew_0031 0.23 -3.8 33,559 + Shew_0031 0.26 -5.2 33,588 - Shew_0031 0.29 -3.2 33,618 + Shew_0031 0.31 -4.0 33,626 - Shew_0031 0.32 -2.8 33,626 - Shew_0031 0.32 -4.6 33,849 - Shew_0031 0.51 -2.1 33,943 - Shew_0031 0.59 -3.9 34,358 + -3.9 34,366 - -3.6 34,565 - -3.3 34,585 + -3.9 34,802 + Shew_0032 0.12 -3.7 34,802 + Shew_0032 0.12 -2.4 34,810 - Shew_0032 0.12 -3.1 34,840 + Shew_0032 0.13 -3.9 34,985 + Shew_0032 0.18 -2.5 34,985 + Shew_0032 0.18 -4.1 34,985 + Shew_0032 0.18 -2.9 34,993 - Shew_0032 0.18 -3.9 35,223 - Shew_0032 0.25 -1.8 35,313 + Shew_0032 0.28 -3.9 35,384 + Shew_0032 0.30 -4.0 35,395 + Shew_0032 0.31 -2.6 35,561 - Shew_0032 0.36 -2.7 35,762 + Shew_0032 0.42 -5.1 35,877 - Shew_0032 0.46 -3.4 36,056 + Shew_0032 0.52 -3.4 36,262 + Shew_0032 0.58 -3.6 36,548 + Shew_0032 0.67 -5.3 37,182 + Shew_0032 0.87 -5.1 37,182 + Shew_0032 0.87 -3.1 37,207 + Shew_0032 0.88 -4.2 37,296 + -3.2 37,960 + +0.0 37,968 - -1.2 38,118 - Shew_0033 0.17 +0.4 38,295 + Shew_0033 0.27 -0.8 38,564 + Shew_0033 0.42 -0.1
Or see this region's nucleotide sequence