Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5876

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5875 and Pf6N2E2_5876 are separated by 30 nucleotidesPf6N2E2_5876 and Pf6N2E2_5877 overlap by 4 nucleotidesPf6N2E2_5877 and Pf6N2E2_5878 are separated by 52 nucleotides Pf6N2E2_5875 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 6,696,633 to 6,697,664 _5875 Pf6N2E2_5876 - Lipase (EC 3.1.1.3), at 6,697,695 to 6,698,042 _5876 Pf6N2E2_5877 - Phosphohistidine phosphatase SixA, at 6,698,039 to 6,698,491 _5877 Pf6N2E2_5878 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 6,698,544 to 6,698,987 _5878 Position (kb) 6697 6698 6699Strain fitness (log2 ratio) -1 0 1at 6697.533 kb on + strand, within Pf6N2E2_5875at 6697.836 kb on + strand, within Pf6N2E2_5876at 6697.836 kb on + strand, within Pf6N2E2_5876at 6697.900 kb on + strand, within Pf6N2E2_5876at 6697.901 kb on - strand, within Pf6N2E2_5876at 6697.901 kb on - strand, within Pf6N2E2_5876at 6697.901 kb on - strand, within Pf6N2E2_5876at 6697.901 kb on - strand, within Pf6N2E2_5876at 6698.038 kb on + strandat 6698.038 kb on + strandat 6698.039 kb on - strandat 6698.181 kb on - strand, within Pf6N2E2_5877at 6698.181 kb on - strand, within Pf6N2E2_5877at 6698.181 kb on - strand, within Pf6N2E2_5877at 6698.181 kb on - strand, within Pf6N2E2_5877at 6698.181 kb on - strand, within Pf6N2E2_5877at 6698.600 kb on + strand, within Pf6N2E2_5878at 6698.600 kb on + strand, within Pf6N2E2_5878at 6698.601 kb on - strand, within Pf6N2E2_5878at 6698.757 kb on + strand, within Pf6N2E2_5878at 6698.757 kb on + strand, within Pf6N2E2_5878at 6698.758 kb on - strand, within Pf6N2E2_5878at 6698.758 kb on - strand, within Pf6N2E2_5878at 6698.758 kb on - strand, within Pf6N2E2_5878at 6698.758 kb on - strand, within Pf6N2E2_5878at 6698.758 kb on - strand, within Pf6N2E2_5878at 6698.784 kb on + strand, within Pf6N2E2_5878at 6698.785 kb on - strand, within Pf6N2E2_5878at 6698.785 kb on - strand, within Pf6N2E2_5878at 6698.785 kb on - strand, within Pf6N2E2_5878at 6698.785 kb on - strand, within Pf6N2E2_5878at 6698.785 kb on - strand, within Pf6N2E2_5878at 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.996 kb on + strandat 6698.997 kb on - strandat 6698.997 kb on - strandat 6698.997 kb on - strandat 6698.997 kb on - strandat 6698.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,697,533 + Pf6N2E2_5875 0.87 +1.0
6,697,836 + Pf6N2E2_5876 0.41 -0.0
6,697,836 + Pf6N2E2_5876 0.41 +0.1
6,697,900 + Pf6N2E2_5876 0.59 -0.4
6,697,901 - Pf6N2E2_5876 0.59 -0.4
6,697,901 - Pf6N2E2_5876 0.59 +0.1
6,697,901 - Pf6N2E2_5876 0.59 -0.7
6,697,901 - Pf6N2E2_5876 0.59 -1.1
6,698,038 + -1.7
6,698,038 + +0.2
6,698,039 - -0.5
6,698,181 - Pf6N2E2_5877 0.31 -1.0
6,698,181 - Pf6N2E2_5877 0.31 +0.4
6,698,181 - Pf6N2E2_5877 0.31 +0.6
6,698,181 - Pf6N2E2_5877 0.31 -0.9
6,698,181 - Pf6N2E2_5877 0.31 -1.0
6,698,600 + Pf6N2E2_5878 0.13 +0.0
6,698,600 + Pf6N2E2_5878 0.13 -0.2
6,698,601 - Pf6N2E2_5878 0.13 +0.3
6,698,757 + Pf6N2E2_5878 0.48 -0.1
6,698,757 + Pf6N2E2_5878 0.48 -0.1
6,698,758 - Pf6N2E2_5878 0.48 +0.1
6,698,758 - Pf6N2E2_5878 0.48 +0.4
6,698,758 - Pf6N2E2_5878 0.48 +0.5
6,698,758 - Pf6N2E2_5878 0.48 -0.4
6,698,758 - Pf6N2E2_5878 0.48 +0.3
6,698,784 + Pf6N2E2_5878 0.54 -0.3
6,698,785 - Pf6N2E2_5878 0.54 -0.0
6,698,785 - Pf6N2E2_5878 0.54 +1.4
6,698,785 - Pf6N2E2_5878 0.54 -0.5
6,698,785 - Pf6N2E2_5878 0.54 -0.9
6,698,785 - Pf6N2E2_5878 0.54 -0.3
6,698,996 + -0.2
6,698,996 + +0.2
6,698,996 + -1.2
6,698,996 + +0.0
6,698,996 + +0.3
6,698,996 + +0.1
6,698,996 + -0.5
6,698,996 + +0.3
6,698,996 + -0.2
6,698,996 + +0.3
6,698,996 + +0.1
6,698,996 + -0.8
6,698,997 - +0.2
6,698,997 - +0.3
6,698,997 - -0.0
6,698,997 - +0.1
6,698,997 - -0.8

Or see this region's nucleotide sequence