Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5875 and Pf6N2E2_5876 are separated by 30 nucleotides Pf6N2E2_5876 and Pf6N2E2_5877 overlap by 4 nucleotides Pf6N2E2_5877 and Pf6N2E2_5878 are separated by 52 nucleotides
Pf6N2E2_5875 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 6,696,633 to 6,697,664
_5875
Pf6N2E2_5876 - Lipase (EC 3.1.1.3), at 6,697,695 to 6,698,042
_5876
Pf6N2E2_5877 - Phosphohistidine phosphatase SixA, at 6,698,039 to 6,698,491
_5877
Pf6N2E2_5878 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 6,698,544 to 6,698,987
_5878
Position (kb)
6697
6698
6699 Strain fitness (log2 ratio)
-1
0
1 at 6697.533 kb on + strand, within Pf6N2E2_5875 at 6697.836 kb on + strand, within Pf6N2E2_5876 at 6697.836 kb on + strand, within Pf6N2E2_5876 at 6697.900 kb on + strand, within Pf6N2E2_5876 at 6697.901 kb on - strand, within Pf6N2E2_5876 at 6697.901 kb on - strand, within Pf6N2E2_5876 at 6697.901 kb on - strand, within Pf6N2E2_5876 at 6697.901 kb on - strand, within Pf6N2E2_5876 at 6698.038 kb on + strand at 6698.038 kb on + strand at 6698.039 kb on - strand at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.600 kb on + strand, within Pf6N2E2_5878 at 6698.600 kb on + strand, within Pf6N2E2_5878 at 6698.601 kb on - strand, within Pf6N2E2_5878 at 6698.757 kb on + strand, within Pf6N2E2_5878 at 6698.757 kb on + strand, within Pf6N2E2_5878 at 6698.758 kb on - strand, within Pf6N2E2_5878 at 6698.758 kb on - strand, within Pf6N2E2_5878 at 6698.758 kb on - strand, within Pf6N2E2_5878 at 6698.758 kb on - strand, within Pf6N2E2_5878 at 6698.758 kb on - strand, within Pf6N2E2_5878 at 6698.784 kb on + strand, within Pf6N2E2_5878 at 6698.785 kb on - strand, within Pf6N2E2_5878 at 6698.785 kb on - strand, within Pf6N2E2_5878 at 6698.785 kb on - strand, within Pf6N2E2_5878 at 6698.785 kb on - strand, within Pf6N2E2_5878 at 6698.785 kb on - strand, within Pf6N2E2_5878 at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.996 kb on + strand at 6698.997 kb on - strand at 6698.997 kb on - strand at 6698.997 kb on - strand at 6698.997 kb on - strand at 6698.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,697,533 + Pf6N2E2_5875 0.87 +1.0 6,697,836 + Pf6N2E2_5876 0.41 -0.0 6,697,836 + Pf6N2E2_5876 0.41 +0.1 6,697,900 + Pf6N2E2_5876 0.59 -0.4 6,697,901 - Pf6N2E2_5876 0.59 -0.4 6,697,901 - Pf6N2E2_5876 0.59 +0.1 6,697,901 - Pf6N2E2_5876 0.59 -0.7 6,697,901 - Pf6N2E2_5876 0.59 -1.1 6,698,038 + -1.7 6,698,038 + +0.2 6,698,039 - -0.5 6,698,181 - Pf6N2E2_5877 0.31 -1.0 6,698,181 - Pf6N2E2_5877 0.31 +0.4 6,698,181 - Pf6N2E2_5877 0.31 +0.6 6,698,181 - Pf6N2E2_5877 0.31 -0.9 6,698,181 - Pf6N2E2_5877 0.31 -1.0 6,698,600 + Pf6N2E2_5878 0.13 +0.0 6,698,600 + Pf6N2E2_5878 0.13 -0.2 6,698,601 - Pf6N2E2_5878 0.13 +0.3 6,698,757 + Pf6N2E2_5878 0.48 -0.1 6,698,757 + Pf6N2E2_5878 0.48 -0.1 6,698,758 - Pf6N2E2_5878 0.48 +0.1 6,698,758 - Pf6N2E2_5878 0.48 +0.4 6,698,758 - Pf6N2E2_5878 0.48 +0.5 6,698,758 - Pf6N2E2_5878 0.48 -0.4 6,698,758 - Pf6N2E2_5878 0.48 +0.3 6,698,784 + Pf6N2E2_5878 0.54 -0.3 6,698,785 - Pf6N2E2_5878 0.54 -0.0 6,698,785 - Pf6N2E2_5878 0.54 +1.4 6,698,785 - Pf6N2E2_5878 0.54 -0.5 6,698,785 - Pf6N2E2_5878 0.54 -0.9 6,698,785 - Pf6N2E2_5878 0.54 -0.3 6,698,996 + -0.2 6,698,996 + +0.2 6,698,996 + -1.2 6,698,996 + +0.0 6,698,996 + +0.3 6,698,996 + +0.1 6,698,996 + -0.5 6,698,996 + +0.3 6,698,996 + -0.2 6,698,996 + +0.3 6,698,996 + +0.1 6,698,996 + -0.8 6,698,997 - +0.2 6,698,997 - +0.3 6,698,997 - -0.0 6,698,997 - +0.1 6,698,997 - -0.8
Or see this region's nucleotide sequence